linyuiz

linyuiz's Stars

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C79730701169

• oushujun/EDTA

  Extensive de-novo TE Annotator

  Language:Perl3541151174

• lh3/miniasm

  Ultrafast de novo assembly for long noisy reads (though having no consensus step)

  Language:TeX309298670

• lbcb-sci/herro

  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

  Language:Rust201154211

• TobyBaril/EarlGrey

  Earl Grey: A fully automated TE curation and annotation pipeline

  Language:Python150612920

• PoisonAlien/trackplot

  Generate IGV style locus tracks from bigWig files in R

  Language:R14834118

• CSU-KangHu/HiTE

  High-precision TE Annotator

  Language:Python813344

• yeeus/GCI

  A program for assessing the T2T genome continuity

  Language:Python603121

• xuzhougeng/myscripts

  Language:Python555437

• kensung-lab/hypo-assembler

  Language:C372155

• SwiftSeal/resistify

  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightweight and easy to use.

  Language:Python282112

• xjtu-omics/HiCAT

  HiCAT new project

  Language:Python272112

• linyuiz/zgtools

  zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.

  Language:HTML25213

• nongxinshengxin/quickGenome

  an R package for the convenient accounting of genomic information and extraction of gene sequences

  Language:R7100

• zhouyflab/Grapepan

  Grapevine pangenome facilitates trait genetics and genomic breeding

  Language:Shell6001

• lzjhehe/Grapepan

  Grapevine pangenome facilitates trait genetics and genomic breeding

  Language:Shell3103

• wang-tianpeng/Brassica_homoeologous_exchanges

  Language:Python3101

• linyuiz/myscripts

  Language:Python1000

• linyuiz/Pear_Haplotype_Genome

  Codes for pear haplotype genome and pangenome graph construction

  Language:Python1000

• linyuiz/small-contig-reassignment

  To reassign small contigs after manual grouping by small contig removal, rescue & optimization

  Language:Python1000

• linyuiz/sorghum_T2T

  The codes to assemble two sorghum cultivars

  Language:Jupyter Notebook1000

• linyuiz/TomatoSuperPanGenome

  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon

  Language:Perl1000

• linyuiz/Watermelon-pangenome

  Language:Shell1000