Feature request: add counts for individuals with a specific variant
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berntpopp commented
Add a column with the number of individuals who have a ceratin genotype (0/1 vs 1/1, and maybe 0/0 if gVCF)
berntpopp commented
Also count the toal number of individuals or alleles (e.g. 0/0, 01,, 1/1).
CAVE: the currently merged VCFs are set to 0/0 instead of ./. if no call was present. So this will always result in the cohort size.