scholl-lab/vcf-filtering

Feature Request: Add Script to Generate IGV Browser Screenshots

Opened this issue · 1 comments

berntpopp commented

Develop a script that generates screenshots of the alignment of the variants in the IGV browser. This will aid in the visual validation of the filtering results.

Acceptance Criteria:

  • Create a script to generate IGV screenshots for specified variants.
  • Ensure the script is configurable for different IGV settings.
  • Update the README with instructions on how to use the new script.
berntpopp commented

The script should be able to take multiple BAM files including Tumor, Normal, and Controls.