schyen

abif_fasta

function to read abif files and convert to one fasta file with trimming option available

AdventOfCode2021

adventofcode_2019

exercises for advent of code 2019

isolationWorkflow

R package to help with workflow of building a strain library during isolation experiments. Allows you to preview, trim Sanger sequences before organizing into a fasta file that is ready to BLAST. Reads Blast results, and aligns sequences in order to build and curate a strain library

MetaboMate

All you need for NMR-based metabolic profiling with R!

NGSKit

oligotype_input

function to create a file that is compatible for oligotyping by Meren using the output files of mothur

parse_blast

function to read xml output of NCBI blast and produce a csv file of the hits based on query cover, evalue, percent identity and total score

pipeline_tutorial1

example pipeline for mara[py]thon

somefxns

R package. Collection of custom functions that I commonly apply.

schyen/parse_blast

function to read xml output of NCBI blast and produce a csv file of the hits based on query cover, evalue, percent identity and total score

schyen/abif_fasta

function to read abif files and convert to one fasta file with trimming option available

schyen/AdventOfCode2021

schyen/adventofcode_2019

exercises for advent of code 2019

schyen/isolationWorkflow

R package to help with workflow of building a strain library during isolation experiments. Allows you to preview, trim Sanger sequences before organizing into a fasta file that is ready to BLAST. Reads Blast results, and aligns sequences in order to build and curate a strain library

schyen/MetaboMate

All you need for NMR-based metabolic profiling with R!

schyen/NGSKit

schyen/oligotype_input

function to create a file that is compatible for oligotyping by Meren using the output files of mothur

schyen/pipeline_tutorial1

example pipeline for mara[py]thon

schyen/somefxns

R package. Collection of custom functions that I commonly apply.