Pinned Repositories
apps
Modular application recipes for the Scientific Filesystem (SCIF)
builder
a template ready to go to easily build, test, and deploy reproducible SCIF containers!
cftw
ctfw (containers for the win) is a base python module for competitive containers
hello-world.scif
A hello world example for a scientific filesystem
jobmaker.scif
An example container with modules to run an executable in different environments / with different job managers
metrics.scif
an example scientific filesystem to provide custom metrics and helpers for a container
sci-f.github.io
The Scientific Filesystem Specification and Documentation
scientific-example.scif
an example variant calling scientific workflow with the standard container integration format (SCI-F)
scif-go
golang implementation of the Scientific Filesystem
snakemake.scif
Tutorial with snakemake and Scientific Filesystem
Scientific Filesystem's Repositories
sci-f/snakemake.scif
Tutorial with snakemake and Scientific Filesystem
sci-f/sci-f.github.io
The Scientific Filesystem Specification and Documentation
sci-f/hello-world.scif
A hello world example for a scientific filesystem
sci-f/scif-go
golang implementation of the Scientific Filesystem
sci-f/jobmaker.scif
An example container with modules to run an executable in different environments / with different job managers
sci-f/metrics.scif
an example scientific filesystem to provide custom metrics and helpers for a container
sci-f/apps
Modular application recipes for the Scientific Filesystem (SCIF)
sci-f/scientific-example.scif
an example variant calling scientific workflow with the standard container integration format (SCI-F)
sci-f/builder
a template ready to go to easily build, test, and deploy reproducible SCIF containers!
sci-f/cftw
ctfw (containers for the win) is a base python module for competitive containers
sci-f/container.scif
example scientific filesystem to assess metrics across different solutions to a single problem, printing "Hello World"
sci-f/demo-ftw
demo / testing for containers ftw framework, testing building and running on CI
sci-f/flavours-of-physics.scif
containers-ftw version of https://www.kaggle.com/c/flavours-of-physics
sci-f/nextflow-scif
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
sci-f/tob
Technical Oversight Board (TOB)