scipion-em/scipion-em-tomo

Import CTF - unable to import the CTFs from reliontomo test dataset

Closed this issue · 4 comments

Description:

  • The image attached shows the working file directory elements.

  • TS imported correctly: tsId present are TS_03, TS_54.

  • Protocol log files attached.

Screenshot from 2024-01-22 11-08-05
run.stderr.txt
run.stdout.txt

thank you @JorMaister , I'll have a look

Update:

I noticed that in the case of TS_03, the defocus file has 40 lines, while the TS has 41 angles, and that is the cause of the error... We're adding the code the capability to allow the importing of TS and CTF considering the exclude views if there are any. It does not solve this problem as we don't now in this case whch view was excluded, but may cover the rest of the cases. I suggest to skip the CTFs in which this size mismatching is found and report the user in the summary or something. I can do it myself if you want, @azazellochg.

sure, go ahead, you will fix it faster than me :)

Ok then, I'll assign this issue to myself.