scipion-em/scipion-em-tomo

Issues

• Exclude views edit

  #457 opened 3 months ago by pconesa
  1

• Add 'Find protocol' (ctrl + f) as a button to the project toolbar

  #483 opened 3 months ago by JorMaister
  3

• Compose Tilt series protocol is running indefinitely without creating anything

  #502 opened 3 months ago by danielmarchan3
  0

• tilt series viewer errors

  #488 opened 4 months ago by azazellochg
  2

• TS import: adapt the dose calculation fro the cases of to beginning in 1 and in 0 when importing using a pattern

  #497 opened 4 months ago by JorMaister
  0

• join in tomography should allow the join of heterogeneous sets in terms of dimensions and number of tilt images

  #495 opened 4 months ago by JorMaister
  0

• Tilt axis angle in the import movies is not prioritized

  #489 opened 5 months ago by pconesa
  0

• Add CTFTomo automatic filter based on a specified criteria, e., g., defocus value

  #482 opened 6 months ago by JorMaister
  0

• setFramesRange is not used when importing TS movies

  #334 opened 7 months ago by azazellochg
  0

• Refactor the protocol fit vesicles

  #433 opened 8 months ago by JorMaister
  0

• odd/even TS sets stay opened

  #385 opened 8 months ago by azazellochg
  1

• Import tomo CTF

  #467 opened 8 months ago by pconesa
  0

• Review tilt series import

  #466 opened 8 months ago by pconesa
  0

• Review import tomograms

  #465 opened 8 months ago by pconesa
  0

• Review subsetting join in tomo

  #461 opened 8 months ago by pconesa
  0

• Set acquisition info from import tilt series

  #456 opened 8 months ago by Vilax
  0

• Design & validation fix required in protocol TS import

  #458 opened 8 months ago by JorMaister
  0

• error importing from tlt

  #375 opened 8 months ago by Vilax
  9

• Missing impor landmark models

  #443 opened 10 months ago by fede-pe
  0

• Subsetting of landmark models is broken

  #455 opened 8 months ago by fede-pe
  0

• Missing manual acquisition params in import subtomograms

  #391 opened a year ago by MartinSalinas98
  1

• Allow interaction with Scipion when display window is open

  #312 opened 9 months ago by fede-pe
  0

• report alignment in tilt-series movies alignment protocols

  #335 opened 9 months ago by fede-pe
  1

• Impossible to get the shift trajectories in the movie alignment of TiltSeriesM

  #448 opened 9 months ago by danielmarchan3
  2

• Import CTF - unable to import the CTFs from reliontomo test dataset

  #446 opened 9 months ago by JorMaister
  4

• Import from https://cryoetdataportal.czscience.com/

  #444 opened 9 months ago by pconesa
  1

• I is not possible to generate subsets of landmark models

  #434 opened a year ago by fede-pe
  0

• Fix the MRC header sampling rate in the protocols that generate tomograms, averages and tomomasks

  #432 opened a year ago by JorMaister
  0

• Napari viewer list 0 coordinates

  #420 opened a year ago by pconesa
  5

• Assign Transformation matrix to odd and even with a binning

  #280 opened 2 years ago by Vilax
  3

• SetOfTomoMask cannot ve visualized

  #373 opened a year ago by Vilax
  2

• ComposeTS seem to be confused!!

  #404 opened a year ago by pconesa
  3

• import coordinates does not rescale

  #398 opened a year ago by Vilax
  1

• Open tilt series with ImageJ

  #381 opened a year ago by Vilax
  1

• Streaming import of Tilt-SeriesMovies doesn't work

  #349 opened a year ago by olofsvensson
  4

• Allow tomo to mics to make an averge

  #377 opened a year ago by pconesa
  5

• import mrcs TS stack with 40 tilts using 41 section mdoc file. The output TS object had 41 tilts. Only found this during CTF estimation when it failed. Maybe this could be checked at the import validation?

  #384 opened a year ago by JorMaister
  0

• strange behaviour of tomo3d denoiser in aretomo reconstruction

  #379 opened a year ago by plosana
  5

• Problem getting ProtComposeTS to work in streaming

  #353 opened a year ago by olofsvensson
  11

• Compose TiltSerie tasks

  #327 opened a year ago by albertmena
  2

• Tidy up SPA and STA 'do split even odd' parameter and funtionality inheritance

  #289 opened a year ago by JorMaister
  1

• Should we remove the dose when dose has been applied...

  #297 opened 2 years ago by pconesa
  9

• Importing tilt series using tlt or rawtlt file

  #303 opened 2 years ago by MohamadHarastani
  10

• Problem in viewers in devel

  #299 opened 2 years ago by MohamadHarastani
  2

• Allow import tilt-series to read angles from xmd files

  #307 opened 2 years ago by fede-pe
  0

• Allow manually and visually subset a tilt series

  #296 opened 2 years ago by pconesa
  0

• Manually and visually subset a tilt series

  #295 opened 2 years ago by pconesa
  0

• Allow to delete interpolated tilt series

  #293 opened 2 years ago by pconesa
  0

• Subset tilt series by eye, manually

  #294 opened 2 years ago by pconesa
  0

• subsets of setofsubtomograms are not taken by the protocols

  #286 opened 2 years ago by Vilax
  0