Pinned Repositories
ACX_CO2_poisoning
bioscrape_distr
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
Breeding_Pool
Genetic Simulation, originally based of XKCD's what-if dnd character model of inheritance.
ChiBio
ChiBio primary operating system.
murraylab_tools
Functions for building Echo picklists and directions for setting up source plates for the Echo. Mostly intended for setting up TX-TL experiments.
PED
MATLAB code for variable selection from microarray expression data by binomial regression with Penalized Euclidean Distance.
surface_crns
Package for simulating and displaying chemical reaction networks (CRNs) on a surface.
sclamons's Repositories
sclamons/surface_crns
Package for simulating and displaying chemical reaction networks (CRNs) on a surface.
sclamons/murraylab_tools
Functions for building Echo picklists and directions for setting up source plates for the Echo. Mostly intended for setting up TX-TL experiments.
sclamons/PED
MATLAB code for variable selection from microarray expression data by binomial regression with Penalized Euclidean Distance.
sclamons/ACX_CO2_poisoning
sclamons/bioscrape_distr
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
sclamons/Breeding_Pool
Genetic Simulation, originally based of XKCD's what-if dnd character model of inheritance.
sclamons/ChiBio
ChiBio primary operating system.
sclamons/chitin-simulator
A GUI-based surface CRN simulator, written in Rust
sclamons/coli_crew_project_3
CS155 Project 3, by the Coli Crew (John Marken & Samuel Clamons)
sclamons/DNA_Instrument
An audio debugger for DNA
sclamons/GraphAlignmentViewer
sclamons/gtfparse
Parsing tools for GTF (gene transfer format) files
sclamons/hamilton
A framework for quickly developing simulations of evolutionary experiments.
sclamons/hypothesis
Hypothesis is a powerful, flexible, and easy to use library for property-based testing. Forked for dev work
sclamons/jellyfish_tracking
sclamons/JuliaBox
Juliabox continues to run, but this codebase is no longer current.
sclamons/keras
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano or TensorFlow.
sclamons/keras_sandy
sclamons/LW_Quest_Analysis
An analysis of the D&D.Sci problem from LessWrong (https://www.lesswrong.com/posts/HsxT2cpPWYzTg9tpY/d-and-d-sci)
sclamons/plasmid_replication_modeling
sclamons/Porechop-1
adapter trimmer for Oxford Nanopore reads
sclamons/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
sclamons/sclamons.github.io
sclamons/tests-as-linear
Common statistical tests are linear models (or: how to teach stats)
sclamons/tribehacks-nucleases
sclamons/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
sclamons/xbase
XBASE - a database and web framework for bacterial genomics and next-generation sequencing