/sequence-labeling-BiLSTM-CRF

The BiLSTM-CRF model implementation in Tensorflow, for sequence labeling tasks.

Primary LanguageJavaScriptGNU General Public License v3.0GPL-3.0

BiLSTM+CRF for sequential labeling tasks

Authour Python Configurable Tensorflow BiLSTM+CRF License

πŸš€πŸš€πŸš€ A TensorFlow implementation of BiLSTM+CRF model, for sequence labeling tasks.

Project Features
  • based on Tensorflow api.
  • highly scalable; everything is configurable.
  • modularized with clear structure.
  • very friendly for beginners.
  • easy to DIY.

Task and Model

Sequential labeling is one typical methodology modeling the sequence prediction tasks in NLP. Common sequential labeling tasks include, e.g.,

  1. Part-of-Speech (POS) Tagging,
  2. Chunking,
  3. Named Entity Recognition (NER),
  4. Punctuation Restoration,
  5. Sentence Boundary Detection,
  6. Scope Detection,
  7. Chinese Word Segmentation (CWG),
  8. Semantic Role Labeling (SRL),
  9. Spoken Language Understanding,
  10. Event Extraction,
  11. and so forth...

Taking Named Entity Recognition (NER) task as example:

Stanford University located at California .
B-ORG    I-ORG      O       O  B-LOC      O

here, two entities, Stanford University and California are to be extracted. And specifically, each token in the text is tagged with a corresponding label. E.g., {token:Stanford, label:B-ORG}. The sequence labeling model aims to predict the label sequence, given a token sequence.

BiLSTM+CRF proposed by Lample et al., 2016, is so far the most classical and stable neural model for sequential labeling tasks. BiLSTM+CRF

Project

Function Support

  • configuring all settings

    • Running Mode: [train/test/interactive_predict/api_service]
    • Datasets(Input/Output):
    • Labeling Scheme:
      • [BIO/BIESO]
      • [PER|LOC|ORG]
      • ...
    • Model Configuration:
      • encoder: BGU/Bi-LSTM, layer, Bi/Uni-directional
      • decoder: crf/softmax,
      • embedding level: char/word,
      • with/without self attention
      • hyperparameters,
      • ...
    • Training Settings:
      • subscribe measuring metrics: [precision,recall,f1,accuracy]
      • optimazers: GD/Adagrad/AdaDelta/RMSprop/Adam
    • Testing Settings,
    • Api service Settings,

  • logging everything

  • web app demo for easy demonstration

  • object oriented: BILSTM_CRF, Datasets, Configer, utils

  • modularized with clear structure, easy for DIY.

see more in HandBook.

Requirements

  • python >=3.5
  • tensorflow >=1.8
  • numpy
  • pandas
  • Django==1.11.8
  • jieba
  • ...

Setup

Option A:

download the repo for directly use.

git clone https://github.com/scofield7419/sequence-labeling-BiLSTM-CRF.git
pip install -r requirements.txt

Option B: TODO

install the BiLSTM-CRF package as a module.

pip install BiLSTM-CRF

usage:

from BiLSTM-CRF.engines.BiLSTM_CRFs import BiLSTM_CRFs as BC
from BiLSTM-CRF.engines.DataManager import DataManager
from BiLSTM-CRF.engines.Configer import Configer
from BiLSTM-CRF.engines.utils import get_logger

...

config_file = r'/home/projects/system.config'
configs = Configer(config_file)

logger = get_logger(configs.log_dir)
configs.show_data_summary(logger) # optional

dataManager = DataManager(configs, logger)
model = BC(configs, logger, dataManager)
        
###### mode == 'train':
model.train()

###### mode == 'test':
model.test()

###### mode == 'single predicting':
sentence_tokens, entities, entities_type, entities_index = model.predict_single(sentence)
if configs.label_level == 1:
    print("\nExtracted entities:\n %s\n\n" % ("\n".join(entities)))
elif configs.label_level == 2:
    print("\nExtracted entities:\n %s\n\n" % ("\n".join([a + "\t(%s)" % b for a, b in zip(entities, entities_type)])))


###### mode == 'api service webapp':
cmd_new = r'cd demo_webapp; python manage.py runserver %s:%s' % (configs.ip, configs.port)
res = os.system(cmd_new)

open `ip:port` in your browser.

Module Structure


β”œβ”€β”€ main.py
β”œβ”€β”€ system.config
β”œβ”€β”€ HandBook.md
β”œβ”€β”€ README.md
β”‚
β”œβ”€β”€ checkpoints
β”‚   β”œβ”€β”€ BILSTM-CRFs-datasets1
β”‚   β”‚   β”œβ”€β”€ checkpoint
β”‚   β”‚   └── ...
β”‚   └── ...
β”œβ”€β”€ data
β”‚   β”œβ”€β”€ example_datasets1
β”‚   β”‚   β”œβ”€β”€ logs
β”‚   β”‚   β”œβ”€β”€ vocabs
β”‚   β”‚   β”œβ”€β”€ test.csv
β”‚   β”‚   β”œβ”€β”€ train.csv
β”‚   β”‚   └── dev.csv
β”‚   └── ...
β”œβ”€β”€ demo_webapp
β”‚   β”œβ”€β”€ demo_webapp
β”‚   β”œβ”€β”€ interface
β”‚   └── manage.py
β”œβ”€β”€ engines
β”‚   β”œβ”€β”€ BiLSTM_CRFs.py
β”‚   β”œβ”€β”€ Configer.py
β”‚   β”œβ”€β”€ DataManager.py
β”‚   └── utils.py
└── tools
    β”œβ”€β”€ calcu_measure_testout.py
    └── statis.py

  • Folds

    • in engines fold, providing the core functioning py.
    • in data-subfold fold, the datasets are placed.
    • in checkpoints-subfold fold, model checkpoints are stored.
    • in demo_webapp fold, we can demonstrate the system in web, and provides api.
    • in tools fold, providing some offline utils.

  • Files

    • main.py is the entry python file for the system.
    • system.config is the configure file for all the system settings.
    • HandBook.md provides some usage instructions.
    • BiLSTM_CRFs.py is the main model.
    • Configer.py parses the system.config.
    • DataManager.py manages the datasets and scheduling.
    • utils.py provides on the fly tools.

Quick Start

Under following steps:

step 1. composing your configure file in system.config.

  • configure the Datasets(Input/Output).
  • configure the Labeling Scheme.
  • configure the Model architecture.
  • configure the webapp setting when demonstrating demo.

system.config

step 2. starting training (necessary and compulsory)

  • configure the running mode.
  • configure the training setting.
  • run main.py.

training

step 3. starting testing (optional)

  • configure the running mode.
  • configure the testing setting.
  • run main.py.

step 4. starting interactively predicting (optional)

  • configure the running mode.
  • run main.py.
  • interactively input sentences.

interactively predicting

step 5. starting api service and web app (optional)

  • configure the running mode.
  • configure the api_service setting.
  • run main.py.
  • make interactively prediction in browser.

web app1

web app2

Datasets

Input

Datasets including trainset, testset, devset are necessary for the overall usage. However, is you only wanna train the model the use it offline, only the trainset is needed. After training, you can make inference with the saved model checkpoint files. If you wanna make test, you should

For trainset, testset, devset, the common format is as follows:

  • word level:
(Token)         (Label)

for             O
the             O
lattice         B_TAS
QCD             I_TAS
computation     I_TAS
of              I_TAS
nucleon–nucleon I_TAS
low-energy      I_TAS
interactions    E_TAS
.               O

It              O
consists        O
in              O
simulating      B_PRO
...
  • char level:
(Token) (Label)

马 B-LOC
ζ₯ I-LOC
θ₯Ώ I-LOC
亚 I-LOC
ε‰― O
ζ€» O
理 O
。 O

δ»– O
ε…Ό O
δ»» O
θ΄’ B-ORG
ζ”Ώ I-ORG
部 I-ORG
ι•Ώ O
...

Note that:

  1. the testset can only exists with the the Token row.
  2. each sentence of tokens is segmented with a blank line.
  3. go to the example dataset for detailed formation.

Output (during testing phase)

During testing, model will output the predicted entities based on the test.csv. The output files include two: test.out, test.entity.out(optional).

  • test.out

    with the same formation as input test.csv.

  • test.entity.out

Sentence
entity1 (Type)
entity2 (Type)
entity3 (Type)
...

test.entity.out

DIY

If you wanna adapt this project to your own specific sequence labeling task, you may need the following tips.

  • Download the repo sources.

  • Labeling Scheme (most important)

    • label_scheme: BIO/BIESO
    • label_level: with/without suffix
    • hyphen, for connecting the prefix and suffix: B_PER', I_LOC'
    • suffix=[NR,NS,NT]
    • labeling_level: word/char

  • Model: modify the model architecture into the one you wanted, in BiLSTM_CRFs.py.

  • Dataset: adapt to your dataset, in the correct formation.

  • Training

    • specify all directories.
    • training hyperparameters.

Others

For more useage details, please refers to the HandBook

You're welcomed to issue anything wrong.

Updating...

  • 2019-Jun-04, Vex version, v1.0, supporting configuration, scalable.
  • 2018-Nov-05, support char and word level embedding.
  • 2017-Dec-06, init version, v0.1.

License

CC0