scorep

scorep is a module that allows tracing of python scripts using Score-P.

Table of Content

scorep
Table of Content
Install
Use
Compatibility
- Working
- Not Working
Citing
Acknowledgments

Install

You need at least Score-P 5.0, build with --enable-shared and the gcc compiler plugin. Please make sure that scorep-config is in your PATH variable.

For Ubuntu LTS systems there is a non-official ppa of Score-P available: https://launchpad.net/~andreasgocht/+archive/ubuntu/scorep .

Then install the package from PyPI

pip install scorep

or build them from source

pip install .

Use

To trace the full script, you need to run

python -m scorep <script.py>

The usual Score-P environment Variables will be respected. Please have a look at:

score-p.org

and

Score-P Documentation

There is also a small HowTo in the wiki.

Since version 0.9 it is possible to pass the traditional Score-P instrumentation commands to the Score-P bindings, e.g.:

python -m scorep --mpp=mpi --thread=pthread <script.py>

Please be aware that these commands are forwarded to scorep-config, not to scorep. Flags like --verbose won't work.

Instrumenter

The instrumenter ist the key part of the bindings. It registers with the Python tracing interface, and cares about the fowarding of events to Score-P. There are currently five different instrumenter types available as described in the following section Instrumenter Types . A user interface, to dynamically enable and disable the automatic instrumentation, using the python hooks, is also available and described under Instrumenter User Interface

Instrumenter Types

With version 2.0 of the python bindings, the term "instrumenter" is introduced. The instrumenter describes the class that maps the Python trace or profile events to Score-P. Please be aware, that trace and profile does not refer to the traditional Score-P terms of tracing and profiling, but to the Python functions sys.settrace and sys.setprofile.

The instrumenter that shall be used for tracing can be specified using --instrumenter-type=<type>. Currently there are the following instrumenters available:

profile (default) implements call and return
trace implements call and return
cProfile / cTrace are the same as the above but implemented in C++
dummy does nothing, can be used without -m scorep (as done by user instrumentation)

The profile instrumenter should have a smaller overhead than trace. Using the instrumenters implemented in C++ additionally reduces the overhead but those are only available in Python 3.

It is possible to disable the instrumenter passing --noinstrumenter. However, the Instrumenter User Interface may override this flag.

Instrumenter User Interface

It is possible to enable or disable the instrumenter during the program runtime using a user interface:

with scorep.instrumenter.disable():
    do_something()

with scorep.instrumenter.enable():
    do_something()

The main idea is to reduce the instrumentation overhead for regions that are not of interest. Whenever the instrumenter is disabled, function enter or exits will not be trace. However, user regions as described in User Regions are not affected. Both functions are also available as decorators.

As an example:

import numpy as np

[...]
c = np.dot(a,b)
[...]

You might not be interested, what happens during the import of numpy, but actually how long dot takes. If you change the code to

import numpy as np
import scorep

[...]
with scorep.instrumenter.enable():
    c = np.dot(a,b)
[...]

and run the code with python -m scorep --noinstrumenter run.py only the call to np.dot and everything below will be instrumented.

With version 3.1 the bindings support the annotation of regions where the instrumenter setting was changed. You can pass a region_name to the instrumenter calls, e.g. scorep.instrumenter.enable("enabled_region_name") or scorep.instrumenter.disable("disabled_region_name"). This might be useful if you do something expensive, and just want to know how long it takes, but you do not care what happens exactly e.g.:

[...]
def fun_calls(n):
    if (n>0):
        fun_calls(n-1)

with scorep.instrumenter.disable("my_fun_calls"):
    fun_calls(1000000)
[...]

my_fun_calls will be present in the trace or profile but fun_calls will not.

However, doing

[...]
with scorep.instrumenter.disable():
    with scorep.instrumenter.disable("my_fun_calls"):
        fun_calls(1000000)
[...]

will only disable the instrumenter, but my_fun_calls will not appear in the trace or profile, as the second call to scorep.instrumenter.disable did not change the state of the instrumenter. Please look to User Regions, if you want to annotate a region, no matter what the instrumenter state is.

Instrumenter File

Handing a Python file to --instrumenter-file allows the instrumentation of modules and functions without changing their code. The file handed to --instrumenter-file is executed before the script is executed so that the original function definition can be overwritten before the function is executed. However, using this approach, it is no longer possible to track the bring up of the module.

To simplify the instrumentation, the user instrumentation contains two helper calls:

scorep.user.instrument_function(function, instrumenter_fun=scorep.user.region)
scorep.user.instrument_module(module, instrumenter_fun=scorep.user.region):

while instrumenter_fun might be one of:

scorep.user.region, decorator as explained below
scorep.instrumenter.enable, decorator as explained above
scorep.instrumenter.disable, decorator as explained above

Using the scorep.instrumenter decorators, the instrumentation can be enabled or disabled from the given function. The function is executed below enable or disable. Using scorep.user.region, it is possible to instrument a full python program. However, I discourage this usage, as the overhead of the user instrumentation is higher than the built-in instrumenters.

Using scorep.user.instrument_module, all functions of the given Python Module are instrumented.

An example instrumenter file might look like the following:

import scorep.user

# import module that shall be instrumented
import module_to_instrument
import module

# hand over the imported module, containing functions which shall be instrumented
scorep.user.instrument_module(module_to_instrument)

# hand the function to be instrumented, and overwrite the original definiton of that function
module.function_to_instrument = scorep.user.instrument_function(module.function_to_instrument)

MPI

To use trace an MPI parallel application, please specify

python -m scorep --mpp=mpi <script.py>

User Regions

Since version 2.0 the python bindings support context managers for user regions:

with scorep.user.region("region_name"):
    do_something()

Since version 2.1 the python bindings support also decorators for functions:

@scorep.user.region("region_name")
def do_something():
    #do some things

If no region name is given, the function name will be used e.g.:

@scorep.user.region()
def do_something():
    #do some things

will result in __main__:do_something.

The traditional calls to define a region still exists, but the usage is discouraged:

scorep.user.region_begin("region_name")
scorep.user.region_end("region_name")

User parameters can be used in any case:

scorep.user.parameter_int(name, val)
scorep.user.parameter_uint(name, val)
scorep.user.parameter_string(name, string)

where name defines the name of the parameter or region, while val or string represents the value that is passed to Score-P.

Disabling the recording with Score-P is still also possible:

scorep.user.enable_recording()
scorep.user.disable_recording()

However, please be aware that the runtime impact of disabling Score-P is rather small, as the instrumenter is still active. For details about the instrumenter, please see Instrumenter.

Overview about Flags

The following flags are special to the python bindings:

--noinstrumenter disables the instrumentation of python code. Useful for user instrumentation and to trace only specific code regions using scorep.instrumenter.enable.
--instrumenter-type=<type> choose an instrumenter. See Instrumenter.
--keep-files temporary files are kept.

Backward Compatibility

To maintain backwards compatibility, the following flags are set per default:

python -m scorep --compiler --thread=pthread <script.py>

The traditional --mpi does still work, and is similar to the following call:

python -m scorep --compiler --thread=pthread --mpp=mpi <script.py>

To disable compiler interface, please specify:

python -m scorep --nocompiler <script.py>

However, this will not remove any compiler instrumentation in any binary.

For other thread schemes just specify --thread=<something>. E.g. :

python -m scorep --thread=omp <script.py>

Please be aware the --user is always passed to Score-P, as this is needed for the python instrumentation.

Compatibility

Working

python3
python2.7, but not all features are supported
mpi using mpi4py
threaded applications

Not Working

python multiprocessing
- Score-P does currently only support MPI or SHMEM. Any other multiprocessing approach cannot be traced.
tracking importlib.reload()

Citing

If you publish some work using the python bindings, we would appriciate, if you could cite one of the following paper:

Gocht A., Schöne R., Frenzel J. (2021)
Advanced Python Performance Monitoring with Score-P.
In: Mix H., Niethammer C., Zhou H., Nagel W.E., Resch M.M. (eds) Tools for High Performance Computing 2018 / 2019. Springer, Cham.
https://doi.org/10.1007/978-3-030-66057-4_14

A preprint can be found at: http://arxiv.org/abs/2010.15444

The full paper is available at: https://doi.org/10.1007/978-3-030-66057-4_14

Gocht-Zech A., Grund A. and Schöne R. (2021)
Controlling the Runtime Overhead of Python Monitoring with Selective Instrumentation
In: 2021 IEEE/ACM International Workshop on Programming and Performance Visualization Tools (ProTools)
https://doi.org/10.1109/ProTools54808.2021.00008

The full paper is available at:

https://doi.org/10.1109/ProTools54808.2021.00008

Acknowledgments

The European Union initially supported this work as part of the European Union’s Horizon 2020 project READEX (grant agreement number 671657).

score-p/scorep_binding_python