sct-pipeline/bavaria-quebec

Issues

• Create an exclude.yml file for discarding subjects between old and new datasets

  #23 opened a year ago by naga-karthik
  0

• Running inference and computing test metrics on `deepseg_lesion` data

  #22 opened a year ago by naga-karthik
  6

• Useful statistics for training models

  #20 opened 2 years ago by naga-karthik
  3

• Optional: saggital channel registration for nn-unet (and other models) using sct_register_multimodal

  #19 opened 2 years ago by jqmcginnis
  0

• Bug: Re-Binarization of labels in pre-processing routine

  #18 opened 2 years ago by jqmcginnis
  4

• Test and clarify nn-unet baseline implementation

  #17 opened 2 years ago by jqmcginnis
  0

• Discrepancy in image-label file names in the BIDS-formatted dataset

  #14 opened 2 years ago by naga-karthik
  6

• document strategy for creating masks

  #7 opened 2 years ago by jcohenadad
  4

• BIDS convention for labels

  #13 opened 2 years ago by jcohenadad
  1

• Open Questions regarding BIDS convention of dataset

  #10 opened 2 years ago by jqmcginnis
  1

• Invoking standalone python script to merge jsons from sct_run_batch

  #12 opened 2 years ago by jqmcginnis
  2

• make sure lesion segmentation output are encoded as FLOAT

  #9 opened 2 years ago by jcohenadad
  1

• code suggestion

  #8 opened 2 years ago by jcohenadad
  0

• Document pipeline

  #2 opened 2 years ago by jcohenadad
  4

• Problem with Brain processing pipeline

  #1 opened 2 years ago by jcohenadad
  7