scverse/rapids_singlecell

Adding other DE methods into rapids_singlecell

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SNOL2 commented

Hi. I was wondering if DE methods in scanpy could be added into rapids_singlecell, e.g. wilcoxon test. Additionally, could rapids_singlecell return log2FC and fraction of cells expressing the genes?
Thanks in advance!

Intron7 commented

@SNOL2 I don't know how well wilcoxon and other methods like this will scale on the GPU. For advanced DEG testing I would recommend using pesudo-bulk with pyDESeq2

SNOL2 commented

Got it. Thanks!