scverse/rapids_singlecell

Issues

• [QST] adata.X integer overflow for indptr

  #249 opened 4 months ago by sdettle
  2

• rsc.tl.umap raising ValueError when using neighbors generated by bbknn(metric='angular')

  #234 opened 4 months ago by SNOL2
  1

• [BUG] ImportError: cannot import name 'AnyRandom' from 'scanpy._utils'

  #246 opened 5 months ago by ehvr20
  1

• CUDADriverError: CUDA_ERROR_ILLEGAL_ADDRESS with rapids_singlecell on A100 80G GPUs

  #131 opened 10 months ago by lisch7
  4

• [FEA] `key_added` to UMAP, tSNE, PCA

  #201 opened 5 months ago by Intron7
  0

• [BUG] PCA Dense CUML23.08 CUDA12

  #56 opened 5 months ago by Intron7
  6

• bug with rsc.tl.rank_genes_groups_logreg

  #238 opened 5 months ago by christophechu
  1

• [FEA] update decoupler functions

  #223 opened 6 months ago by Intron7
  0

• [FEA] Efficient sparse to dense

  #219 opened 6 months ago by Intron7
  0

• Error when running rsc.pp.highly_variable_genes

  #178 opened 8 months ago by SNOL2
  7

• [BUG] rsc.pp.scrublet: ValueError: Number of components should not be greater thanthe number of columns in the data

  #203 opened 6 months ago by fuzh25
  2

• Normalized expression values different from scanpy

  #208 opened 7 months ago by tjbencomo
  2

• Issues with Leidenclustering

  #44 opened a year ago by Intron7
  4

• [BUG] umap needs init_pos = 'random' for larger datasets

  #196 opened 8 months ago by bkmartinjr
  4

• [BUG] FutureWarning from Pandas 2.2.1 in groupby call

  #195 opened 8 months ago by bkmartinjr
  3

• Support for 64-bit indptr data and multiple GPU？

  #43 opened a year ago by YH-Zheng
  7

• [FEA] `sc.tl.ingest`

  #182 opened 8 months ago by maarten-devries
  2

• [BUG] running the Leiden algorithm doesn't support oversubscription

  #171 opened 9 months ago by Lem-P
  3

• [QST] QC kernels

  #165 opened 9 months ago by dyuan1111
  6

• Adding other DE methods into rapids_singlecell

  #163 opened 9 months ago by SNOL2
  2

• [BUG] rsc.get.aggregate looses values

  #152 opened 9 months ago by Intron7
  0

• Running with multiple GPUs

  #157 opened 9 months ago by SNOL2
  1

• [BUG] CUSOLVER_STATUS_EXECUTION_FAILED on tl.pca

  #141 opened 9 months ago by grst
  2

• [BUG] Leiden does not work with neighborhood graph generated with algos `ivfpq` or `cagra`

  #142 opened 9 months ago by grst
  1

• Attribute error in notebooks

  #138 opened 10 months ago by knollr
  1

• Feature: Support infercnvpy

  #116 opened a year ago by xflicsu
  2

• Output from harmony step: rsc.pp.harmony_integrate(Bdata,key="orig.ident"), isn't used in constructing neighborhood graph of cells: rsc.pp.neighbors(Bdata,n_neighbors=15, n_pcs=50)

  #121 opened a year ago by 31474molly
  4

• normalize_total slower than CPU implementation

  #111 opened a year ago by jpintar
  13

• Expose additional parameters in Leiden and Louvain

  #101 opened a year ago by jpintar
  3

• How to control the memory of GPU with more than 1 million cells?

  #104 opened a year ago by xflicsu
  3

• [QST] What are the differences with Scanpy?

  #70 opened a year ago by cpuritz
  1

• [BUG] - Import error with new version of RAPIDS

  #96 opened a year ago by johnhickey22
  3

• rsc.tl.leiden results too many clusters

  #98 opened a year ago by Todzhu
  1

• [BUG] Lack of "params" entry in adata.uns["pca"] might break compatibility with scanpy

  #90 opened a year ago by lorenzoamir
  1

• Implicit conversion to a NumPy array is not allowed

  #81 opened a year ago by rjesud
  3

• [neighbors] sparse matrix to ind/dist matrix pair: same as PyNNDescent?

  #80 opened a year ago by flying-sheep
  2

• Reproducibility

  #62 opened a year ago by grst
  6

• [BUG] Import time

  #64 opened a year ago by ivirshup
  7

• conda-forge package?

  #65 opened a year ago by ivirshup
  3

• [BUG] Script run via slurm job does not terminate when importing rapids_singlecell

  #59 opened a year ago by mumichae
  6

• "IOStream.flush timed out" is printed when running rsc.tl.harmony_integrate

  #45 opened a year ago by YH-Zheng
  13

• Adopt scverse cookiecutter template

  #34 opened a year ago by Zethson
  2

• Fail instead of skipping

  #40 opened a year ago by flying-sheep
  0

• nice sphinx extensions

  #38 opened a year ago by flying-sheep
  1

• Data limit for rsc.tl.harmony_integrate() lower than expected

  #30 opened a year ago by johnhickey22
  5

• Merge functionality of cunnData and AnnData?

  #28 opened 2 years ago by ivirshup
  1

• Installation Error on A100-SXM

  #17 opened 2 years ago by jefferyUstc
  3

• Reaching out re support letter

  #5 opened 2 years ago by avantikalal
  0