tjbencomo

MD/PhD student at UW and Fred Hutch | Computational Biology and Cancer Immunology

Pinned Repositories

bioinfo-scripts
Assortment of bioinformatics scripts
Language:Python1 2 00
bulk-rnaseq
Workflow to process bulk RNASeq samples using Salmon and DESeq2
Language:Python1 2 181
cna-pipeline
Whole exome somatic copy number analysis with Sequenza and CNVKit
Language:Python1 2 10
cs191w
Language:R10
kaplan-meier-problems
Survival data simulations to evaluate statistical power of Kaplan Meier analysis
Language:R0 2 00
ngs-pipeline
Pipeline for Somatic Variant Calling with WES and WGS data
Language:Python21 4 574
notes
Lab notes and software usage guides
0 2 01
pharmer
Python tool to convert UWSOM drug list info into Anki cards
Language:Python0 2 00
rna-pipeline
RNA sequencing pipeline for Stanford's Sherlock HPC cluster
Language:C++1 2 22
survival-talk-pntlab
Best practices for survival analysis at PNT Lab
Language:HTML3 2 01

tjbencomo's Repositories

tjbencomo/ngs-pipeline
Pipeline for Somatic Variant Calling with WES and WGS data
Language:Python21 4 574
tjbencomo/survival-talk-pntlab
Best practices for survival analysis at PNT Lab
Language:HTML3 2 01
tjbencomo/bioinfo-scripts
Assortment of bioinformatics scripts
Language:Python1 2 00
tjbencomo/bulk-rnaseq
Workflow to process bulk RNASeq samples using Salmon and DESeq2
Language:Python1 2 181
tjbencomo/cna-pipeline
Whole exome somatic copy number analysis with Sequenza and CNVKit
Language:Python1 2 10
tjbencomo/cs191w
Language:R10
tjbencomo/rna-pipeline
RNA sequencing pipeline for Stanford's Sherlock HPC cluster
Language:C++1 2 22
tjbencomo/.vim
Language:Vim Script0 2 00
tjbencomo/kaplan-meier-problems
Survival data simulations to evaluate statistical power of Kaplan Meier analysis
Language:R0 2 00
tjbencomo/notes
Lab notes and software usage guides
0 2 01
tjbencomo/pharmer
Python tool to convert UWSOM drug list info into Anki cards
Language:Python0 2 00
tjbencomo/check-strand
Infer strandedness of RNA-Seq data
Language:Python2 02
tjbencomo/chemistry
2 0
tjbencomo/col11a1-manuscript
Language:R1 0
tjbencomo/col11a1-wes-pipeline
WES Pipeline for Lee et. al paper describing neoplastic invasion caused by mutant COL11A1
Language:Python2 0
tjbencomo/cs235
Language:Python2 0
tjbencomo/cs235-final-project
Language:Python
tjbencomo/docker-recipes
Language:Dockerfile
tjbencomo/ecdna-cscc
Language:R1 0
tjbencomo/FindMyForest
Matching algorithm for FindMyForest CS278 Project
Language:Python2 0
tjbencomo/github-pages-with-jekyll
2 2
tjbencomo/nb-helper
Language:Python2 0
tjbencomo/ngs-pipeline-retired
NGS Processing Pipelines for WGS and WES data
Language:Python2 14
tjbencomo/nmsc-star
Language:Python1 0
tjbencomo/plot-test
Language:R2 0
tjbencomo/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
Language:Python1 0
tjbencomo/scc-meta-analysis
Language:R1 0
tjbencomo/star-rsem
Language:Python2 6
tjbencomo/TBmisc
Another R package with tools for working with biomedical data
Language:R2 9
tjbencomo/tjbencomo.github.io
My personal website
Language:HTML2 0