Pinned Repositories
AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
EvoPlay
fqtool
A useful fastq processing tool revised from fastp
GAPIT
Genome Association Predict Integrate Tools
pBWA
Parallel bwa implementation
QEdit
RNA editing quantification in deep transcriptome data
tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
scw0101001's Repositories
scw0101001/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
scw0101001/AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
scw0101001/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
scw0101001/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
scw0101001/EvoPlay
scw0101001/fqtool
A useful fastq processing tool revised from fastp
scw0101001/GAPIT
Genome Association Predict Integrate Tools
scw0101001/pBWA
Parallel bwa implementation
scw0101001/QEdit
RNA editing quantification in deep transcriptome data
scw0101001/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
scw0101001/VisualMSI
Detect and visualize microsatellite instability(MSI) from NGS data