sdellicour
I am a F.R.S.-FNRS Research Associate at the University of Brussels (ULB) and a Visiting Professor at the University of Leuven (KU Leuven, Rega Institute)
F.R.S.-FNRS (National Fund for Scientific Research, Belgium)Brussels
Pinned Repositories
covid19_spell
Input files and scripts related to our study entitled "Investigating the drivers of the spatio-temporal heterogeneity in COVID-19 hospital incidence – Belgium as a study case" (Dellicour et al. 2021, Int. J. Health Geogr.)
Ct_measures_LHUB
Input files and scripts related to our study entitled "Leveraging of SARS-CoV-2 PCR Cycle Thresholds Values to Forecast COVID-19 Trends" (Yin, Dellicour et al. 2021, Front. Med.)
dispersal_capacities
Input files and scripts related to our study entitled "How fast are viruses spreading in the wild?", and which provides a framework for comparing the dispersal capacity of viruses (Dellicour et al. in press, PLoS Biol.)
h5n1_mekong
Tutorial on how preparing a continuous phylogeographic inference using heterogeneous sampling priors associated with the tips (Dellicour et al. 2020, Bioinformatics)
h5nx_risk_mapping
Input files and scripts related to our study entitled "Global risk mapping of highly pathogenic avian influenza H5N1 and H5Nx in the light of epidemic episodes occurring from 2020 onward" (Dupas et al. submitted)
lassa_spreads
Input files and scripts related to our study entitled "Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades" (Klitting et al. 2022, Nat. Commun.)
sars-cov-2_liege
Input files and scripts related to our study entitled "Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020" (Bollen et al. 2021, Sci. Rep.)
sars_cov_2_pipeline
Analytical pipeline developed and applied for the study “A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages” (Dellicour et al. 2021, Mol. Biol. Evol.)
seraphim
R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2016, BMC Bioinf.)
wnv_north_america
Input files and scripts related to our study entitled "Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework" (Dellicour et al. 2020, Nature Commun.)
sdellicour's Repositories
sdellicour/seraphim
R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2016, BMC Bioinf.)
sdellicour/wnv_north_america
Input files and scripts related to our study entitled "Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework" (Dellicour et al. 2020, Nature Commun.)
sdellicour/covid19_spell
Input files and scripts related to our study entitled "Investigating the drivers of the spatio-temporal heterogeneity in COVID-19 hospital incidence – Belgium as a study case" (Dellicour et al. 2021, Int. J. Health Geogr.)
sdellicour/h5n1_mekong
Tutorial on how preparing a continuous phylogeographic inference using heterogeneous sampling priors associated with the tips (Dellicour et al. 2020, Bioinformatics)
sdellicour/sars_cov_2_pipeline
Analytical pipeline developed and applied for the study “A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages” (Dellicour et al. 2021, Mol. Biol. Evol.)
sdellicour/dispersal_capacities
Input files and scripts related to our study entitled "How fast are viruses spreading in the wild?", and which provides a framework for comparing the dispersal capacity of viruses (Dellicour et al. in press, PLoS Biol.)
sdellicour/lassa_spreads
Input files and scripts related to our study entitled "Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades" (Klitting et al. 2022, Nat. Commun.)
sdellicour/sars-cov-2_liege
Input files and scripts related to our study entitled "Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020" (Bollen et al. 2021, Sci. Rep.)
sdellicour/Ct_measures_LHUB
Input files and scripts related to our study entitled "Leveraging of SARS-CoV-2 PCR Cycle Thresholds Values to Forecast COVID-19 Trends" (Yin, Dellicour et al. 2021, Front. Med.)
sdellicour/h5nx_risk_mapping
Input files and scripts related to our study entitled "Global risk mapping of highly pathogenic avian influenza H5N1 and H5Nx in the light of epidemic episodes occurring from 2020 onward" (Dupas et al. submitted)
sdellicour/lsvd_analyses
Input files and scripts related to our study entitled "Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus" (Van Borm*, Dellicour* et al. 2024, J. Virol.)
sdellicour/new_york_variants
Input files and scripts related to our study entitled "Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City — from Alpha to Omicron" (Dellicour et al. 2023, PLoS Path.)
sdellicour/projections_bombus
Input files and scripts related to our study entitled "Projected decline in European bumblebee populations in the twenty-first century" (Ghisbain et al. 2024, Nature)
sdellicour/rabv_cambodia
Input files and scripts related to our study entitled "Uncovering the endemic circulation of rabies in Cambodia" investigating patterns of endemic signatures (Layan et al. 2023, Mol. Ecol.)
sdellicour/asfv_spread_belgium
Analytical pipeline allowing to investigate the impact of environmental factors on a wavefront progression (and applied on the African swine fever outbreak in Belgium; Dellicour et al. 2020, J. Applied Ecol.)
sdellicour/asfv_phylogeography
Input files and scripts related to our study entitled "Exploiting viral DNA genomes to explore the dispersal history of African swine fever genotype II lineages in Europe" (Gámbaro et al. submitted)
sdellicour/ea-2023-dg_emergence
Input files and scripts related to our study entitled "Tracing the genesis and spread of a novel high pathogenicity H5N1 clade 2.3.4.4b avian influenza virus reassortant genotype (EA-2023-DG) in western Europe" (Van Borm et al. submitted)
sdellicour/h3n1_belgian_outbreak
Input files and scripts related to our study entitled "Combining phylogeographic analyses and epidemiological contact tracing to characterize an atypically highly pathogenic H3N1 avian influenza epidemic (Belgium, 2019)" (Van Borm*, Boseret*, Dellicour* et al. 2023, Emerg. Infect. Dis.)
sdellicour/hiv_central_africa
BEAST XML files and Supplementary Information (SI) files related to our study entitled "Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa" (Faria et al. 2019, PLoS Path.).
sdellicour/landscape_phylogeography
Input files and scripts related to our study entitled "Peaks and valleys of landscape phylogeography", and which provides a simulation framework for assessing the statistical performances of four landscape phylogeographic approaches (Dellicour et al. in prep.)
sdellicour/msv_symptom_evolution
Input files and scripts related to our study entitled "Symptom evolution following the emergence of maize streak virus" (Monjane*, Dellicour* et al. 2020, eLife)
sdellicour/sars-cov-2_new_york
Input files and scripts related to our study entitled "Dispersal dynamics of SARS-CoV-2 lineages during the first epidemic wave in New York City" (Dellicour et al. 2021, PLoS Path.)
sdellicour/sdm_bombus
Input files and scripts related to our study entitled "Wildlife conservation strategies should incorporate both taxon identity and geographical context - further evidence with bumblebees" (Ghisbain et al. 2020, Div. Dist.)
sdellicour/vdpv_wavefront
R scripts related to the wavefront analyses performed in the study "Unravelling spatiotemporal heterogeneities of wild and vaccine-derived poliovirus spread: past and present" (Candido et al. submitted)
sdellicour/wnv_enm_europe
Input files and scripts related to our study entitled "Contribution of climate change to the spatial expansion of West Nile virus in Europe" (Erazo et al. 2024, Nature Commun.)