/dawe_ab10_kindr

Evolutionary analyses from Dawe et al., 2018

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Evolutionary analyses for Dawe et al., 2018, A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize

Data and scripts included to:

  1. assemble_tripsacum/ perform a local assembly of tripsacum kinesins

  2. kinesin_tree/ build tree of related kinesins

  3. positive_selection/ test for positive selection on kindr copies using BUSTED

  4. kinesin_divergence_dating/ date origin of kindr array

  5. identify_haplotypes/ characterize IBS regions and plot haplotypes