SeaFlow@UW
SeaFlow@UW seeks to create reproducible analytical methods to uniformly process and curate SeaFlow data
University of Washington, Seattle, WA USA
Pinned Repositories
bayesian-matrix-population-model
A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration
flowmix
Statistical analysis of ocean flow cytometry data.
fsc-poc-calibration
Conversion from light scattering measured by SeaFlow to carbon per cell
fsc-size-calibration
Conversion from light scattering measured by SeaFlow to cell diameter
mpm-workflow
SeaFlow matrix population model workflow
popcycle
Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
seaflow-sfl
SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.
seaflow-virtualcore
Calibration of SeaFlow's Virtual Core
SeaFlow_cruise_report
knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.
seaflowpy
Python package with library and CLI tool for analyzing SeaFlow data
SeaFlow@UW's Repositories
seaflow-uw/popcycle
Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
seaflow-uw/seaflowpy
Python package with library and CLI tool for analyzing SeaFlow data
seaflow-uw/fsc-size-calibration
Conversion from light scattering measured by SeaFlow to cell diameter
seaflow-uw/seaflow-sfl
SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.
seaflow-uw/fsc-poc-calibration
Conversion from light scattering measured by SeaFlow to carbon per cell
seaflow-uw/mpm-workflow
SeaFlow matrix population model workflow
seaflow-uw/seaflow-virtualcore
Calibration of SeaFlow's Virtual Core
seaflow-uw/SeaFlow_cruise_report
knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.
seaflow-uw/bayesian-matrix-population-model
A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration
seaflow-uw/flowmix
Statistical analysis of ocean flow cytometry data.
seaflow-uw/realtime-dbs
SeaFlow realtime analysis parameter databases
seaflow-uw/seaflog
Command-line tool and Go library for parsing SeaFlow instrument v1 log files
seaflow-uw/seaflow-filter
seaflow-uw/seaflow-website
seaflow data website