sean-cho

Computational biologist

Johns Hopkins UniversityBaltimore

Pinned Repositories

1kgenomes-gvcfs
Scripts for creating gVCF files for 1000 genomes data using StarCluster.
Language:Python0 2 00
demtables
Make demographic tables.
Language:R0 2 30
Epicopy
Epicopy R package for CNV identification from methylation microarrays.
Language:R1 2 10
EpicopyData
EpicopyData companion data package for Epicopy.
0 2 00
figshare_onekg
Query and download 1000 Genomes gVCF located on figshare
Language:Python8 3 10
scu_pipelines
SCU pipelines for data analysis.
Language:R0 2 10
toolkit
Collection of wrappers and functions for R.
Language:R11

sean-cho's Repositories

sean-cho/figshare_onekg
Query and download 1000 Genomes gVCF located on figshare
Language:Python8 3 10
sean-cho/Epicopy
Epicopy R package for CNV identification from methylation microarrays.
Language:R1 2 10
sean-cho/toolkit
Collection of wrappers and functions for R.
Language:R11
sean-cho/1kgenomes-gvcfs
Scripts for creating gVCF files for 1000 genomes data using StarCluster.
Language:Python0 2 00
sean-cho/demtables
Make demographic tables.
Language:R0 2 30
sean-cho/EpicopyData
EpicopyData companion data package for Epicopy.
0 2 00
sean-cho/scu_pipelines
SCU pipelines for data analysis.
Language:R0 2 10
sean-cho/biotrac2018_epigenetics
Materials for BIOTRAC 2018 Advances in Epigenetics Workshop
Language:HTML2 0
sean-cho/bsmn-pipeline
BSMN common data processing pipeline
Language:Shell
sean-cho/datasets
Language:R
sean-cho/EDirect_EUtils_API_Cookbook
sean-cho/gatk
Official code repository for GATK versions 4 and up
Language:Java
sean-cho/learning_genomics
My notebook documenting various genomics concepts.
Language:Jupyter Notebook
sean-cho/questing
Tips, tricks, and recipes from my random walk in programming
sean-cho/sc_toolbox
Collection of R code for genomics data analysis, visualization, and management.
Language:R
sean-cho/sean-cho.github.io
Forked from mmistakes/minimal-mistakes and academicpages/academicpages
Language:JavaScript