seanlaidlaw
PhD student working in cancer genomics and single-cell multi-omics at @sanger. Previously Masters' Student at Université de Montpellier
Cambridge
Pinned Repositories
Anki-QuickAdd
A graphical pop-up that allows rapid adding of notes to Anki from anywhere without having to alt-tab away from what youre doing.
better-bjobs
curses based wrapper script for LSF BJOBS command to improve on design and increase usefulness
Better-Bjobs-Go
EBI-Introduction-to-Github
Course material for the EMBL-EBI Introduction to Bioinformatics course
HorizonSynth-Rstudio-Theme
iRODS-Downloader
Wrapper program for hassle-free downloading and realigning of sequencing data from iRODS on a cluster
Metallaxis
A Python GUI VCF viewer for SNP, indels, and TE.
Omnifocus-Habitica-Link
Scripts to allow a transfer of tasks from Omnifocus to Habitica.
ZoomSlideCapture
Javascript userscript for capturing screen share from Zoom meeting connected through web browser.
seanlaidlaw's Repositories
seanlaidlaw/Metallaxis
A Python GUI VCF viewer for SNP, indels, and TE.
seanlaidlaw/better-bjobs
curses based wrapper script for LSF BJOBS command to improve on design and increase usefulness
seanlaidlaw/Better-Bjobs-Go
seanlaidlaw/Omnifocus-Habitica-Link
Scripts to allow a transfer of tasks from Omnifocus to Habitica.
seanlaidlaw/Anki-QuickAdd
A graphical pop-up that allows rapid adding of notes to Anki from anywhere without having to alt-tab away from what youre doing.
seanlaidlaw/EBI-Introduction-to-Github
Course material for the EMBL-EBI Introduction to Bioinformatics course
seanlaidlaw/HorizonSynth-Rstudio-Theme
seanlaidlaw/Readwise-Highlights-Manager
seanlaidlaw/barman
R package to make your G&T (plots). Pre-processes and plots single-cell DNA and RNA data from G&T-seq.
seanlaidlaw/BorrowBox-Scraper
Python script to hands-free download all audiobooks on loan from library BorrowBox account.
seanlaidlaw/EBI-Bioinformatics-course-Scaling_things_up
Scripts from the "Scaling things up" talk I gave at the EBI NGS Bioinformatics course in Sept 2019 and Feb 2021.
seanlaidlaw/FactYou
Machine learning driven bibliography parser for finding the source for things you know.
seanlaidlaw/ZoomSlideCapture
Javascript userscript for capturing screen share from Zoom meeting connected through web browser.
seanlaidlaw/iRODS-Downloader
Wrapper program for hassle-free downloading and realigning of sequencing data from iRODS on a cluster
seanlaidlaw/BetterCoin
Web developpment class project to emulate what a classfied ads website would look like
seanlaidlaw/fancyBar
Ubersicht bar for use with chunkwm
seanlaidlaw/farm-tools
A collection of scripts for use on Sanger HPC to manage downloading, relaligning, and pre-processing
seanlaidlaw/FFHQFaceAlignment
Fork of chi0tzp's Face alignment tool for transforming face images into FFHQ-style
seanlaidlaw/GenomeCampus-Bus-Reserver
Scripts to automate the booking of Campus Bus for the Wellcome Genome Campus
seanlaidlaw/gpt2-app
A Flask Web App for Generating Text with GPT-2
seanlaidlaw/hugo-theme-stack
Card-style Hugo theme designed for bloggers
seanlaidlaw/Instapaper-bulk-delete
seanlaidlaw/land-use-tensorflow-project
A tensorflow project to analyse land use in the Dordogne region over time.
seanlaidlaw/qmk_ergodox_layout
My custom layout for flashing onto the QMK based Ergodox keyboard. The base layout was Canadian Multilingual.
seanlaidlaw/scVarCall
seanlaidlaw/simple-bar
A yabai status bar widget for Übersicht
seanlaidlaw/SmallRNA-GCT
Analysis code used for the Laidlaw et al Andrology paper: "Small non-coding RNA sequencing reveals global dysregulation of piwi-interacting RNA (piRNA) expression in gonadal malignant germ cell tumours." https://doi.org/10.1111/andr.13312
seanlaidlaw/sorin-zsh-theme
Modification of the Sorin theme from Prezto library
seanlaidlaw/termui
Golang terminal dashboard
seanlaidlaw/whisperX-farm-wrapper
Python script for running audio transcription on audio files in google drive, and uploading results to a Notion database