Pinned Repositories
biopython
Official git repository for Biopython (originally converted from CVS)
esmologs
Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
FAMSA3Di
Famsa with the substitution matrix replaced with the 3Di matrix
genomenotebook
A genome browser in your Jupyter notebook
hmmer3di
hmmer3 and easel patched to support the 3di alphabet.
protein_gibbs_sampler
Gibbs sampling for generating protein sequences
protein_scoring
Generating and scoring novel enzyme sequences with a variety of models and metrics
proteinotes
seanrjohnson's Repositories
seanrjohnson/protein_scoring
Generating and scoring novel enzyme sequences with a variety of models and metrics
seanrjohnson/protein_gibbs_sampler
Gibbs sampling for generating protein sequences
seanrjohnson/esmologs
Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
seanrjohnson/hmmer3di
hmmer3 and easel patched to support the 3di alphabet.
seanrjohnson/proteinotes
seanrjohnson/biopython
Official git repository for Biopython (originally converted from CVS)
seanrjohnson/FAMSA3Di
Famsa with the substitution matrix replaced with the 3Di matrix
seanrjohnson/genomenotebook
A genome browser in your Jupyter notebook
seanrjohnson/hmmer_compare
compare hmmer3 profiles