sebgoti
Bioimage Analyst with interest in spatial omics, data analysis, visualization and automated workflows
EMBLHeidelberg, Germany
Pinned Repositories
advanced_machine_learning
Code to go along the lecture course "Advanced Machine Learning for Physics, Science, and Artificial Scientific Discovery"
Cell-Motility-System-for-the-CPM
Ongoing work on cell motility system for the CPM using Morpheus, FitMultiCell, and Python
Cell_motility
Simulations for Master Thesis on Statistical Physics of Cell Motility
Cell_Sorting
Python scripts for Morpheus CPM proyect in Cell Sorting
covidnetwork
Inferring the effect of interventions on COVID-19 transmission networks
FitMultiCell_Tutorial
Contains code and morpheus files used as a FitMultiCell tutorial for parameter estimation and model selection.
MachineLearningA-Z
General working directory for Machine Learning projects.
napari-spacetx-explorer
A simple plugin for an interactive visualization of spatial omics data.
napari-spatial-omics
sebgoti's Repositories
sebgoti/napari-spacetx-explorer
A simple plugin for an interactive visualization of spatial omics data.
sebgoti/FitMultiCell_Tutorial
Contains code and morpheus files used as a FitMultiCell tutorial for parameter estimation and model selection.
sebgoti/Cell-Motility-System-for-the-CPM
Ongoing work on cell motility system for the CPM using Morpheus, FitMultiCell, and Python
sebgoti/MachineLearningA-Z
General working directory for Machine Learning projects.
sebgoti/napari-spatial-omics
sebgoti/advanced_machine_learning
Code to go along the lecture course "Advanced Machine Learning for Physics, Science, and Artificial Scientific Discovery"
sebgoti/Cell_motility
Simulations for Master Thesis on Statistical Physics of Cell Motility
sebgoti/Cell_Sorting
Python scripts for Morpheus CPM proyect in Cell Sorting
sebgoti/covidnetwork
Inferring the effect of interventions on COVID-19 transmission networks
sebgoti/Facial-Similarity-with-Siamese-Networks-in-Pytorch
Implementing Siamese networks with a contrastive loss for similarity learning
sebgoti/first-contributions
🚀✨ Help beginners to contribute to open source projects
sebgoti/github-slideshow
A robot powered training repository :robot:
sebgoti/it-cert-automation-practice
Google IT Automation with Python Professional Certificate - Practice files
sebgoti/itkelastix-registration
Implementation of the Insight Toolkit's library for whole-slide registration of biological images
sebgoti/machine-learning-for-physicists
Code for "Machine Learning for Physicists 2020" lecture series
sebgoti/MachineLearning_R
sebgoti/mcmicro_hackathon_2022
Website for the MCMICRO hackathon 2022
sebgoti/minimal-nextflow-test
Minimal nextflow for workflow for testing and learning
sebgoti/napari
napari: a fast, interactive, multi-dimensional image viewer for python
sebgoti/napari-feature-classifier
sebgoti/napari-spot-detection
sebgoti/practical-python
Practical Python Programming (course by @dabeaz)
sebgoti/pyABC
distributed, likelihood-free inference
sebgoti/scikit-image
Image processing in Python
sebgoti/shell_scripting
Notes and tutorial on shell scripting
sebgoti/spatial-pipeline
Nextflow workflow for the end-to-end analysis image-based spatial-omics data.
sebgoti/spot-detection
sebgoti/starfish
starfish: unified pipelines for image-based transcriptomics
sebgoti/tiny_python_projects
Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.
sebgoti/training-resources
Resources for teaching/preparing to teach bioimage analysis