sebi06
I am skier, chemist, biophysicist, microscopist, pythonist, AI & machine learning and image analysis enthusiast.
Carl Zeiss Microscopy GmbHMunich
Pinned Repositories
BioFormatsRead
This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.
czitools
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.
i2k_2022_zeiss
This repo contains all the material for the I2K 2022
Microscope_Camera_Compare
Python Tool to compare Camera Specifications
napari-czann-segment
Semantic Segmention and Image2Image using DeepLearning ONNX models packaged as *.czann files.
napari_zeiss
Use Napari Viewer to display CZI images
PSF_XYZ_Bead_Fit
Automatic detection of beads for PSF measurement from Z-Stacks using python-bioformats.
python_envs
This repository contains a collection of YML and/or requirments file and tricks to create Python Environments
sebi06.github.io
OAD
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
sebi06's Repositories
sebi06/BioFormatsRead
This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.
sebi06/napari_zeiss
Use Napari Viewer to display CZI images
sebi06/czitools
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.
sebi06/i2k_2022_zeiss
This repo contains all the material for the I2K 2022
sebi06/napari-czann-segment
Semantic Segmention and Image2Image using DeepLearning ONNX models packaged as *.czann files.
sebi06/czi_playground
Small python package to simplify reading CZI Image Metadata (*.czi)
sebi06/czi_demos
Collection of scripts and notebooks demostrating how to read and process CZI image files. Still in beta phase ...
sebi06/Microscope_Camera_Compare
Python Tool to compare Camera Specifications
sebi06/readczi_with_metadata
sebi06/python_envs
This repository contains a collection of YML and/or requirments file and tricks to create Python Environments
sebi06/sebi06.github.io
sebi06/500-AI-Machine-learning-Deep-learning-Computer-vision-NLP-Projects-with-code
500 AI Machine learning Deep learning Computer vision NLP Projects with code
sebi06/awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
sebi06/create_labels_stardist
script to create labels (for training a deep neural network) based on nucleus segmentation using StarDist (still experimental)
sebi06/cytodata-hackathon-base
sebi06/cytodata_2022_workshop
Scripts and tools for the Cytodata 2022 workshop
sebi06/DaskFusion
Fusing image tiles with dask array's map_blocks
sebi06/data-science-ipython-notebooks
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
sebi06/docker_wls2
Instructions how to use docker egnine without docker desktop
sebi06/homemade-machine-learning
🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained
sebi06/ipy_notebooks
sebi06/libczi_sebi06
libCZI is an Open Source Cross-Platform C++ library to read and write CZI.
sebi06/napari-chatgpt-azure
A napari plugin to process and analyse images with chatGPT that works with an Azure endpoint
sebi06/napari-tiler
Tiling and merging support for napari
sebi06/napari-zen-connector
sebi06/OAD_sebi06
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
sebi06/playground_cellpose
Loose collection of scripts using cellpose
sebi06/python-scripts
A repository of python scripts that come in handy in automating day-to-day tasks
sebi06/simple-website-github-template
Website URL
sebi06/tarrow
Time arrow prediction for live-cell microscopy