segalmicrobiomelab
This is the code repository for microbiome, metabolome, transcriptome, and metagenomic projects from the NYU Translational Lung Biology Laboratory
Division of Pulmonary, Critical Care, and Sleep MedicineNew York, NY
Pinned Repositories
ATS_microbiome_commands
functional_microbiomics
Functional Microbiome repository code
general_microbiome_repository
lung_cancer_microbiome
lung_cancer_prognosis_microbiome
Lung Cancer Metagenome Manuscript
niosh_microbiome_project
PASC_paper
PASC Repository
QIIME2_general_repository
ResisTB_documentation
The code and QIIME2 objects from the ResisTB manuscript.
SARS_CoV2
segalmicrobiomelab's Repositories
segalmicrobiomelab/functional_microbiomics
Functional Microbiome repository code
segalmicrobiomelab/lung_cancer_microbiome
segalmicrobiomelab/SARS_CoV2
segalmicrobiomelab/lung_cancer_prognosis_microbiome
Lung Cancer Metagenome Manuscript
segalmicrobiomelab/QIIME2_general_repository
segalmicrobiomelab/ATS_microbiome_commands
segalmicrobiomelab/niosh_microbiome_project
segalmicrobiomelab/OSA_microbiome_repository
segalmicrobiomelab/ResisTB_documentation
The code and QIIME2 objects from the ResisTB manuscript.
segalmicrobiomelab/segalmicrobiomelab.github.io
segalmicrobiomelab/PASC_paper
PASC Repository
segalmicrobiomelab/TB_pemax
South Africa Tuberculosis Project Submission
segalmicrobiomelab/BARTB_Naidoo_Paper
BARTB Repository Code
segalmicrobiomelab/bronchiectasis.neutrophil.elastase
Sputum Neutrophil Elastase associates with microbiota and P.aeruginosa in bronchiectasis
segalmicrobiomelab/COVID_thrombosis_and_transcriptome
segalmicrobiomelab/diet.fiber.colon.cancer
segalmicrobiomelab/drought_index
practice
segalmicrobiomelab/Early.Stage.Lung.Adenocarcinoma.Recurrence.Microbiome
segalmicrobiomelab/HPC_R_iCellR
segalmicrobiomelab/malignant_pleural_fluid
segalmicrobiomelab/Microbial_Metabolism
segalmicrobiomelab/Mild_Moderate_COPD_microbiome
Data Analysis for Manuscript
segalmicrobiomelab/murine.host.microbiota.interaction
Murine dysbiosis experiments
segalmicrobiomelab/ntm_bronchiectasis_microbiome
segalmicrobiomelab/pediatric_chronic_cough_microbiome
Pediatric chronic cough microbiome code
segalmicrobiomelab/QIIME1_general_repository
segalmicrobiomelab/SARS-CoV-2.airway.adaptive.immune.response
segalmicrobiomelab/test
pulling from sulaimanwalsh
segalmicrobiomelab/Transplant_ACR_microbiome_paper
segalmicrobiomelab/Transplant_PGD_microbiome_paper