seharvey2012

seharvey2012's Stars

• TrinityCTAT/CTAT-LR-fusion

  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

  Language:Perl15

• ratschlab/pancanatlas_code_public

  Public repository containing research code for the TCGA PanCanAtlas Splicing project

  Language:Python4216

• jlevy44/AutoParisX

  Language:Python1

• ksugar/qupath-extension-sam

  QuPath extension for Segment Anything Model (SAM)

  Language:Java9415

• pmqs/Fix-OneDrive-Zip

  Fix OneDrive Zip files >4Gig

  Language:Perl27825

• IrinaVKuznetsova/CirGO

  Language:Python2118

• andreped/NoCodeSeg

  🔬 Code-free deep segmentation for computational pathology

  Language:Jupyter Notebook5316

• HenriquesLab/ZeroCostDL4Mic

  ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

  Language:Jupyter Notebook575134

• PingjunChen/pycontour

  Contour python toolkit

  Language:Python72

• williamritchie/IRFinder

  Detecting intron retention from RNA-Seq experiments

  5325

• ksahlin/pyinfor

  some of my codes on bioinformatics with python

  Language:Python69

• JohnUrban/LexoNSseq2015

  Contains notes and custom scripts used to analyze Illumina reads for our NS-seq paper.

  Language:R1

• YeoLab/gffutils

  GFF and GTF file manipulation and interconversion

  Language:Python1

• ChangLab/FAST-iCLIP

  Fully Automated and Standardized (FAST) iCLIP analysis pipeline.

  Language:Jupyter Notebook2115

• YeoLab/clipper

  A tool to identify CLIP-seq peaks

  Language:Python6642

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.9k514

• joshuagryphon/plastid

  Position-wise analysis of sequencing and genomics data

  Language:C3816

• zqfang/GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python587121

• tanghaibao/goatools

  Python library to handle Gene Ontology (GO) terms

  Language:Python798209

• mandel01/programming-for-biologists

  Programming for Biologists workshop series at Northwestern University Chicago Campus

  2