Pinned Repositories
Ashish---generic-scripts
cellranger-atac
Preprocessing pipeline for single-cell ATAC-seq with 10X Genomics kits
CITN12_aPD1
Systems immunology characterization of anti-PD1 immunotherapy in the context of HIV-1 infection.
Methyl-seq
mRNASeq
mrnaseq.variant
Variant (SNP, indel) calling based on RNA-Seq following GATK workflow and adapted to CWRU SLURM cluster
rv144
R code to generate the figure of RV144 transcriptomic study
UMAP_Phenograph
Flow Cytometry workflow for unsupervised analysis
unsupflowhelper
Unsupervised analysis for flow cytometry
vb013
Repo for the R code used for the RNA-Seq analysis in Bissa M. et al 2023 Nat Commun
sekalylab's Repositories
sekalylab/mRNASeq
sekalylab/cellranger-atac
Preprocessing pipeline for single-cell ATAC-seq with 10X Genomics kits
sekalylab/joana
R code to reproduce the transcriptomic analysis of the Dias/Koup project
sekalylab/mrnaseq.variant
Variant (SNP, indel) calling based on RNA-Seq following GATK workflow and adapted to CWRU SLURM cluster
sekalylab/rv144
R code to generate the figure of RV144 transcriptomic study
sekalylab/unsupflowhelper
Unsupervised analysis for flow cytometry
sekalylab/vb013
Repo for the R code used for the RNA-Seq analysis in Bissa M. et al 2023 Nat Commun
sekalylab/Ashish---generic-scripts
sekalylab/CITN12_aPD1
Systems immunology characterization of anti-PD1 immunotherapy in the context of HIV-1 infection.
sekalylab/dual_blockade_IL-10_PD-1_SIV
Ribeiro et al. Dual blockade of IL-10 and PD-1
sekalylab/Methyl-seq
sekalylab/methylSeq
methyl-seq data processing
sekalylab/TV003_prevaccination
Prevaccination study of Dengue vaccine TV003 immunogenicity
sekalylab/UMAP_Phenograph
Flow Cytometry workflow for unsupervised analysis
sekalylab/dream
R script for preprocessing of the DREAM respiratory viral challenge
sekalylab/em131
sekalylab/fluomics.lung
R code to reproduce figures of FluOMICS lung analysis
sekalylab/mdsc
R code to reproduce figures of Vaccari M et al. 2009 Front Immunol
sekalylab/p162
ALVAC-SIV alum in RM macaques (Vaccari M. et al., 2016)
sekalylab/p168
ALVAC-SIV/gp120 vs NYVAC-SIV/gp120
sekalylab/scrnaseq
Preprocessing for Seq-well scRNA-seq
sekalylab/spaceranger
sekalylab/Study36
Study36 - ALVAC-HIV vaccine in NHPs
sekalylab/TGFB-IFN_SIV_reservoir_control
Bioinformatic analysis of the transcriptional response in aIL10-aPD1 treated SIV-infected rhesus macaques
sekalylab/v43
R code to reproduce figures in Vaccari M. et al., 2018
sekalylab/vb012
R code for the transcriptomic analysis of the VB012 study
sekalylab/vrc07
VRC07: source code