Pinned Repositories
elasticsearch2-haystack
An Elasticsearch2 backend for Django-Haystack
gwas2vcf
Convert GWAS summary statistics to VCF. Forked project
mozilla-django-oidc
A django OpenID Connect library
PyPDF2
A utility to read and write PDFs with Python
rd-eztraits
Calculating trait score
rd-imputation-accuracy
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
rsid-overlap
snps
tools for reading, writing, merging, and remapping SNPs
SumStatsRehab
GWAS summary statistics files QC tool
vgraph
vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph representation of genomic variants in to precisely compare complex variants that are refractory to comparison by conventional comparison methods.
SelfDecode's Repositories
selfdecode/rd-imputation-accuracy
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
selfdecode/rd-eztraits
Calculating trait score
selfdecode/snps
tools for reading, writing, merging, and remapping SNPs
selfdecode/django-composite-pk
Composite Primary Key for Django
selfdecode/django-crossdb-foreignkey
selfdecode/django-oidc-provider
OpenID Connect and OAuth2 provider implementation for Djangonauts.
selfdecode/gwas2vcf
Convert GWAS summary statistics to VCF. Forked project
selfdecode/htslib
C library for high-throughput sequencing data formats
selfdecode/mozilla-django-oidc
A django OpenID Connect library
selfdecode/mozilla-django-oidc-detached
A django OpenID Connect library
selfdecode/rsid-overlap
selfdecode/SumStatsRehab
GWAS summary statistics files QC tool
selfdecode/vgraph
vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph representation of genomic variants in to precisely compare complex variants that are refractory to comparison by conventional comparison methods.
selfdecode/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
selfdecode/devtools
Tools to make an R developer's life easier
selfdecode/django-generic-m2m
relate anything to anything
selfdecode/django-model-wrappers
selfdecode/django-outer-join
Outer Join for Django
selfdecode/django-precise-bbcode
A Django application for parsing, displaying and editing BBCodes-based text contents.
selfdecode/drf-tree-routers
selfdecode/gtc-to-vcf
Script to convert GTC/BPM files to VCF
selfdecode/logmanager
Manage logging related operations
selfdecode/PUMAS
Fine-tuning polygenic risk score models using GWAS summary statistics. Forked project
selfdecode/pyrestest
Unit test a REST API with pytest.
selfdecode/python-jose-cryptodome
A JOSE implementation in Python (pycrypto replaced by pycryptodome).
selfdecode/python-stream
selfdecode/ssosync_old
Populate AWS SSO directly with your G Suite users and groups using either a CLI or AWS Lambda
selfdecode/stealth-publish
WordPress.org Plugin Mirror
selfdecode/table-of-contents-plus
A powerful yet user friendly WordPress plugin that automatically creates a table of contents. Can also output a sitemap listing all pages and categories.
selfdecode/wp-postratings
Adds an AJAX rating system for your WordPress blog's post/page.