/seqchromloader

Provide ready-to-use dataloader for deep learning models

Primary LanguagePython

seqchromloader

seqchromloader aims to provide versatile and ready-to-use writer/loader for applying deep learning to bioinformatics study.

Plan to support dataset formats including:

  • webdataset (done)
  • tfrecord (x)

Training framework support:

  • pytorch dataloader (done)
  • pytorch-lightning datamodule (done)
  • NVIDIA-DALI (x)

Installation

conda (suggested):

mamba install -c bioconda -c conda-forge seqchromloader

or

conda install -c bioconda -c conda-forge seqchromloader

pip

pip install seqchromloader

Usage

For detailed usage, please refer to documentation