Get reads in separate files

Question

Get reads in separate files

CarolineOhrman opened this issue 10 years ago · 2 comments

Hi! I have a request to add the possibility to get the output reads in separate files (_1 and _2) and not only interleaved. I think it should be an easy fix. Of course everyone could make their own script to separate them after but it would save time and would be great to have it directly from the NxTrim software.

Thank you for developing this tool!

/Caroline

Answer 1 · 2014-10-27T13:01:55.000Z

I can add this in the next release. Might take a week or so until I get to it.

best,

Jared

Answer 2 · 2014-11-28T09:47:13.000Z

I have added the --separate flag which will generate paired reads in separate (R1/R2) files.