Pinned Repositories
annotation-pipeline
VCF annotation pipeline and variant table manipulation tools
bazam
A read extraction and realignment tool for next generation sequencing data
ExomeSeqGenotypingPipeline
Genotyping and variant annotation pipelines for exome sequencing data
igv-screenshooter-html
takes an HTML screenshot of a given interval of a BAM
ngs-compute-ansible
polonez-project
Updates on the progress of my fellowship
Remus
Tool for identification of regulatory regions relevant to a given monogenic disease phenotype.
targetted-seq-pipeline
Pipeline for analysis of targetted sequencing data
wgs-pipeline
WGS analysis pipeline for rare disorder
zao-pipeline-compute-ansible
Ansible playbook setting up a compute enviroment for automated bacterial genome assembly from MiSeq runs
seru71's Repositories
seru71/ExomeSeqGenotypingPipeline
Genotyping and variant annotation pipelines for exome sequencing data
seru71/polonez-project
Updates on the progress of my fellowship
seru71/annotation-pipeline
VCF annotation pipeline and variant table manipulation tools
seru71/igv-screenshooter-html
takes an HTML screenshot of a given interval of a BAM
seru71/ngs-compute-ansible
seru71/targetted-seq-pipeline
Pipeline for analysis of targetted sequencing data
seru71/wgs-pipeline
WGS analysis pipeline for rare disorder
seru71/zao-pipeline-compute-ansible
Ansible playbook setting up a compute enviroment for automated bacterial genome assembly from MiSeq runs
seru71/bazam
A read extraction and realignment tool for next generation sequencing data
seru71/Remus
Tool for identification of regulatory regions relevant to a given monogenic disease phenotype.
seru71/targetted-seq-qc-ui
seru71/bia-pipeline
seru71/bioinfo-dockerfiles
docker images of containers used in various projects
seru71/ebv_integrations
seru71/gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
seru71/genedepth
seru71/microrna-profiling-pipeline
seru71/NGS-pipeline
NGS pipeline based on the python module ruffus
seru71/NGS-tools
Miscellanous scripts for NGS data analysis and visualisation
seru71/pipeline-training
seru71/remus_manus
seru71/slurm-docker-cluster
A Slurm cluster using docker-compose
seru71/toy-ruffus-pipeline
toy pipeline for testing simple concepts in Ruffus framework
seru71/vrp-pipeline
Viral read purification pipeline
seru71/zao-bia-pipeline
seru71/ZAO_GalaxyKickStart
Ansible playbooks for Galaxy Server deployment @ ZAO, PIWet