sfehrmann

sfehrmann's Stars

• openhab/openhab-core

  Core framework of openHAB

  Language:Java950429

• wlcrs/huawei_solar

  Home Assistant integration for Huawei Solar inverters via Modbus

  Language:Python57993

• bactopia/bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow42373

• MuhammedKalkan/OpenLens

  OpenLens Binary Build Repository

  Language:JavaScript4.1k277

• life4/textdistance

  📐 Compute distance between sequences. 30+ algorithms, pure python implementation, common interface, optional external libs usage.

  Language:Python3.4k251

• microsoft/CloudAdoptionFramework

  Code samples and extended documentation to support the guidance provided in the Microsoft Cloud Adoption Framework

  Language:PowerShell868618

• cascadium/wsl-windows-toolbar-launcher

  Adds linux GUI application menu to a windows toolbar

  Language:Python1.2k51

• nextflow-io/patterns

  A curated collection of Nextflow implementation patterns

  Language:Nextflow33670

• 38/d4-format

  The D4 Quantitative Data Format

  Language:Rust15919

• deweylab/RSEM

  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

  Language:C++424118

• sfehrmann/nextflow.vim

  Vim-syntax plugin for Nextflow. Includes DSL2 updates!

  Language:Vim script1

• Azure/azure-quickstart-templates

  Azure Quickstart Templates

  Language:Bicep14.1k16.2k

• epam/NGB

  New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support

  Language:Java16141

• kaist-ina/BWA-MEME

  BWA-MEME: Faster BWA-MEM2 using learned-index

  Language:C++11414

• vkkodali/cthreepo

  A python script to interconvert seq-ids in gff3, gtf, bed and other files.

  Language:Python62

• bxlab/bx-python

  Tools for manipulating biological data, particularly multiple sequence alignments

  Language:Python15254

• broadinstitute/gtex-pipeline

  GTEx & TOPMed data production and analysis pipelines

  Language:Python348175

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++7.1k370

• refgenie/refgenie

  Reference genome resource manager

  Language:Python7310

• knowledgesystems/knowledgesystems-k8s-deployment

  Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes

  Language:CSS1128

• gencorefacility/reform

  Modify existing reference fasta and gff3/gtf files to include a new sequence

  Language:Python306

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser and genome visualization programs

  Language:TypeScript883112

• NBISweden/AGAT

  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

  Language:Perl47657

• broadinstitute/cromwell

  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

  Language:Scala1k359

• meirwah/awesome-workflow-engines

  A curated list of awesome open source workflow engines

  6.6k643

• pditommaso/awesome-pipeline

  A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

  6.2k627

• dariober/ASCIIGenome

  Text Only Genome Viewer!

  Language:Java20915

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k646

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.3k561

• common-workflow-language/common-workflow-language

  Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

  Language:Common Workflow Language1.5k196