Snakemake Template

Template for the Snakemake workflow management system.

Usage

# install Snakemake
conda install -c bioconda snakemake

# clone template
git clone https://github.com/sfischer13/template-snakemake.git
cd template-snakemake

# initialize project
vim config.yaml
conda create -n snakemake-project --file environment.yaml
source activate snakemake-project

# run project
snakemake -np
snakemake --use-conda

License

Copyright (c) 2017 Stefan Fischer
The source code is available under the MIT License.
See LICENSE for further details.