sfu-compbio/colormap

Case sensitivity for corrected and uncorrected regions

Closed this issue · 2 comments

Since it is possible to run spCorrection more than once, it should be aware of already corrected and uncorrected regions, so that the second round of running always outputs already corrected regions as corrected again (by upper-case characters).

option -c was added in branch iss1. Here is the commit.
If set, characters case are preserved from the input file for the uncorrected regions.
The output is different which is not expected. Checking if it is a bug.

There was a bug introduced by keeping characters case.
The bug is fixed in this commit.