Pinned Repositories
AlignmentTools
Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.
boilerplate
canu
A single molecule sequence assembler for genomes large and small.
community.general
Ansible Community General Collection
containers
CTSgetR
R interface to Chemical Translation Service (CTS)
darwin-scripts
DeGenPrime
Primer design from single genes to whole gene families for unlocking the tree of life
degenprime-test
Experiment in python frontends and packaging
env
sgblanch's dotfiles for macOS and Linux
sgblanch's Repositories
sgblanch/env
sgblanch's dotfiles for macOS and Linux
sgblanch/darwin-scripts
sgblanch/boilerplate
sgblanch/AlignmentTools
Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.
sgblanch/canu
A single molecule sequence assembler for genomes large and small.
sgblanch/community.general
Ansible Community General Collection
sgblanch/containers
sgblanch/CTSgetR
R interface to Chemical Translation Service (CTS)
sgblanch/DeGenPrime
Primer design from single genes to whole gene families for unlocking the tree of life
sgblanch/degenprime-test
Experiment in python frontends and packaging
sgblanch/degenprime-wrap
sgblanch/FungeneUtils
FungeneUtils package
sgblanch/ireland-townlands
sgblanch/LinkageMapView
Plot Linkage Group Maps with QTLs
sgblanch/lollipops
Lollipop-style mutation diagrams for annotating genetic variations.
sgblanch/MetaMapR
Network mapping tool for metabolomics + data.
sgblanch/pathview-web
sgblanch/pbs-scripts
User prologue and epilogue scripts for torque-based clusters
sgblanch/ProbeMatch
Tools for finding (and removing) DNA/RNA primers in sequence reads.
sgblanch/ReadSeq
Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.
sgblanch/recongo
Reconciliation Service API implementation
sgblanch/SeqFilters
Java filtering framework for sequence data
sgblanch/sgblanch.github.io
sgblanch/smartie-sv
calling SVs from Blasr contig level alignments
sgblanch/TaxonomyTree
TaxonomyTree building and traversal utility classes.