Pinned Repositories
alpine-bioperl
Bioperl 1.7.7 containers based on alpine linux
BBTools
BBTools is a suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.
CAFE
Computational Analysis of gene Family Evolution (CAFE)
canu
openjdk:8 based release of CANU, a PacBio assembler
MrBayes
MrBayes, a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.
pilon
Docker based on bioconda distribution (v.1.23), with fixed memory issue
qiime_MaarjAM
Qiime v1.9 formatted MaarjAM database of Arbuscular Mycorrhizal Fungi
R.Qiime_MaarjAM
A semi-automated protocol to get Qiime-formatted MaarjAM database of Arbuscular Mycorrhizal Fungi
TransDecoder
TransDecoder identifies candidate coding regions within transcript sequences.
sghignone's Repositories
sghignone/qiime_MaarjAM
Qiime v1.9 formatted MaarjAM database of Arbuscular Mycorrhizal Fungi
sghignone/R.Qiime_MaarjAM
A semi-automated protocol to get Qiime-formatted MaarjAM database of Arbuscular Mycorrhizal Fungi
sghignone/TransDecoder
TransDecoder identifies candidate coding regions within transcript sequences.
sghignone/alpine-bioperl
Bioperl 1.7.7 containers based on alpine linux
sghignone/aws.alpine
sghignone/BBTools
BBTools is a suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.
sghignone/CAFE
Computational Analysis of gene Family Evolution (CAFE)
sghignone/canu
openjdk:8 based release of CANU, a PacBio assembler
sghignone/MrBayes
MrBayes, a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.
sghignone/pilon
Docker based on bioconda distribution (v.1.23), with fixed memory issue
sghignone/aws.canu
canu for AWS
sghignone/aws.trinityrnaseq
sghignone/awsdemo
sghignone/bowtie2
bowtie2 - Fast and sensitive read alignment, build with bioconda
sghignone/bwa
The BWA v0.7.17 read mapper, build from bioconda
sghignone/docker.mrbayes
sghignone/docker.rstudio-deseq2
sghignone/ecsdemo-crystal
Part 4 of a 4 part ECS Workshop
sghignone/ecsdemo-frontend
sghignone/ecsdemo-nodejs
Part 3 of a 4 part ECS workshop
sghignone/ecsdemo-platform
Phase 1 of a 4 part ECS workshop
sghignone/Hello-world
sghignone/MaarjAM_for_Qiime2
MaarjAM database for studies on the diversity of arbuscular mycorrhizal fungi (Glomeromycota), formatted for Qiime2 (v2023.5)
sghignone/qiime_scripts
Home made scripts to run qiime workflows
sghignone/R_scripts
a place to store my R scripts..before get lost..
sghignone/Rnnotator
Rnnotator is an automated software pipeline that generates transcript models by de novo assembly of RNA-Seq data without the need for a reference genome.
sghignone/samtools
SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda
sghignone/testProject
sghignone/UsareGitHub
Manuale per l'uso di GitHub