Issues
- 7
New tool: tskit2zarr
#232 opened by jeromekelleher - 10
LPL no smaller than PL
#277 opened by jeromekelleher - 2
Add variant length/end coordinate field
#278 opened by jeromekelleher - 0
- 13
Run tests against Zarr 3
#254 opened by tomwhite - 1
Numcodecs v0.13.0 causing test failures
#274 opened by Will-Tyler - 1
Char fields added as Unicode not string
#268 opened by jeromekelleher - 1
- 4
- 9
SVCR Local alleles
#185 opened by jeromekelleher - 13
Hypothesis testing for vcf2zarr
#249 opened by tomwhite - 4
Run tests against numpy 2
#256 opened by jeromekelleher - 0
ValueError: could not broadcast input array
#251 opened by tomwhite - 2
Add support for multiple files to vcfpartition
#212 opened by jeromekelleher - 1
- 1
- 0
Pin to zarr < 3
#250 opened by jeromekelleher - 0
Change project status to Beta
#208 opened by jeromekelleher - 1
Change dexplode-init to use ``--num-parts``/``-n`` instead of positional
#243 opened by jeromekelleher - 0
Change dencode-init to use --num-partitions
#244 opened by jeromekelleher - 0
- 0
Bug in dexplode-partition
#241 opened by jeromekelleher - 0
Restructure vcf2zarr docs
#239 opened by jeromekelleher - 0
Refactor docs build infrastructure
#238 opened by jeromekelleher - 0
Initial documentation for CLI
#170 opened by jeromekelleher - 0
Document example of editing schema
#218 opened by jeromekelleher - 0
Document status of Python API
#221 opened by jeromekelleher - 1
Document copying to cloud storage
#234 opened by jeromekelleher - 0
Add "what about cloud?" docs
#229 opened by jeromekelleher - 0
Add explicit warning for Mac Python 3.9
#231 opened by jeromekelleher - 16
vcf2zarr leaks semaphore objects
#209 opened by tomwhite - 1
Test on ARM macs
#215 opened by jeromekelleher - 0
- 3
error converting a vcf
#217 opened by mufernando - 6
Inconsistent input/output argument order
#219 opened by hyanwong - 1
Returning a string from `.mkschema`
#220 opened by hyanwong - 9
vcf2zarr progress bars aren't updated on Mac
#201 opened by tomwhite - 4
CD publish to pypi didn't trigger on release
#207 opened by jeromekelleher - 1
Progress tests failing on Mac
#175 opened by jeromekelleher - 0
Document platform support
#169 opened by jeromekelleher - 2
Replace ``python -m bio2zarr vcf2zarr`` with ``python -m bio2zarr.vcf2zarr``?
#203 opened by jeromekelleher - 3
- 7
Implement mixed_ploidy support
#179 opened by jeromekelleher - 0
Improve encoding memory bound estimate
#186 opened by jeromekelleher - 2
CD warnings
#181 opened by jeromekelleher - 1
Add tests against sgkit's VCF parsing code
#176 opened by jeromekelleher - 2
- 0
Drop plink2zarr from installation for now
#171 opened by jeromekelleher - 0
Rename vcf_partition CLI and document
#172 opened by jeromekelleher - 0
Windows support
#174 opened by jeromekelleher