Pinned Repositories
analysis-isoseq
GENE-SWitCH project Iso-Seq analysis pipeline
bioconda-recipes
Conda recipes for the bioconda channel.
DensityMap
DensityMap is perl tool for the visualization of features density along chromosomes
gs-tama
GENE SWitCH Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
isoseq
nf-configs
Config files used to define parameters specific to compute environments at different Institutions
nf-core-isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
nf-mixcr
A nextflow pipeline for TCR repertoire building with MiXCR
SQANTI3-singularity
A definition file for building SQANTI3 singularity container (adapted from [joelnitta/sqanti3-docker](https://github.com/joelnitta/sqanti3-docker))
TAMA-singularity
A definition file for building TAMA singularity container
sguizard's Repositories
sguizard/DensityMap
DensityMap is perl tool for the visualization of features density along chromosomes
sguizard/gs-tama
GENE SWitCH Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
sguizard/nf-core-isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
sguizard/isoseq
sguizard/nf-configs
Config files used to define parameters specific to compute environments at different Institutions
sguizard/SQANTI3-singularity
A definition file for building SQANTI3 singularity container (adapted from [joelnitta/sqanti3-docker](https://github.com/joelnitta/sqanti3-docker))
sguizard/TAMA-singularity
A definition file for building TAMA singularity container
sguizard/analysis-isoseq
GENE-SWitCH project Iso-Seq analysis pipeline
sguizard/bioconda-recipes
Conda recipes for the bioconda channel.
sguizard/bioinfo-scripts
Personnal bioinfo scripts
sguizard/bioinfo-utils
Scripts for bioinfo data analysis
sguizard/IsoSeq_v3-singularity
A definition file for building IsoSeq v3 singularity container
sguizard/nf-mixcr
A nextflow pipeline for TCR repertoire building with MiXCR
sguizard/differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
sguizard/gvf2vcf
Super fast conversion of GVF file format to VCF file format
sguizard/mixcr-singularity-container
A repo to store singularity version of mixcr docker image
sguizard/multi-package-containers
Testing building mulled containers for multi-requirement tools.
sguizard/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
sguizard/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
sguizard/nf-ase
Allele Specific Expression pipeline using STAR, WASP and GeneiASE.
sguizard/nf-co.re
Code and files for the main nf-core website.
sguizard/nf-core_modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
sguizard/nf-core_tools
Python package with helper tools for the nf-core community.
sguizard/nf-feelnc
A simple nf script to run feelnc module (from FAANG/analysis-TAGADA)
sguizard/slaMEM
Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array
sguizard/smrnaseq
A small-RNA sequencing analysis pipeline
sguizard/strobemers
A repository for generating strobemers and evalaution
sguizard/TAMA-docker
TAMA Dockerfile
sguizard/test-datasets
Test data to be used for automated testing with the nf-core pipelines
sguizard/ultra
uLTRA is a long-read splice aligner with high accuracy from using a guiding annotation