Convert coordinates from one assembly to another. For Example, From GRCh38 to GRCh37.
Clone this repository:
git clone https://github.com/shaft49/ensembl-assembly-mapping.git
cd ensembl-assembly-mapping
Two ways to achieve the task:
Python Script: Uses rest api for conversion. Go to the python folder and read the documentation to run the script.
cd python
Perl API: Uses ensembl perl api to connect to the database and convert coordinates by using provided methods. Go to the perl folder and read the documentation to run the script.
cd perl