shalinis602/Rosalind

My solutions to Rosalind Bioinformatics problems

Rosalind

Welcome to the Rosalind Solutions repository!

Rosalind is a platform for learning bioinformatics and programming through problem solving. This project aims to provide clear, well-documented solutions to the problems on Rosalind.

Index

• CONS - [Link] [Code]
• DNA - [Link] [Code]
• FIBD - [Link] [Code]
• FIB - [Link] [Code]
• FILT - [Link] [Code]
• FRMT - [Link] [Code]
• GBK - [Link] [Code]
• GC - [Link] [Code]
• GRPH - [Link] [Code]
• HAMM - [Link] [Code]
• IEV - [Link] [Code]
• INI1 - [Link] [Code]
• INI2 - [Link] [Code]
• INI3 - [Link] [Code]
• INI4 - [Link] [Code]
• INI5 - [Link] [Code]
• INI6 - [Link] [Code]
• INI - [Link] [Code]
• IPRB - [Link] [Code]
• LCSM - [Link] [Code]
• LIA - [Link] [Code]
• MEME - [Link] [Code]
• MRNA - [Link] [Code]
• NEED - [Link] [Code]
• PHRE - [Link] [Code]
• PROT - [Link] [Code]
• PTRA - [Link] [Code]
• REVC - [Link] [Code]
• RNA - [Link] [Code]
• RVCO - [Link] [Code]
• SUBS - [Link] [Code]
• TFSQ - [Link] [Code]

Setting Up the Virtual Environment

1. Clone the repository:

   git clone https://github.com/shalinis602/rosalind.git
   cd rosalind

2. Create and activate a virtual environment:

   python3 -m venv venv
   source venv/bin/activate  # On Windows use `venv\Scripts\activate`

3. Install the dependencies:

   pip install -r requirements.txt

Alternatively, you can use conda environment.

1. Install Miniconda or Anaconda.

2. Create and activate the conda environment.

   conda env create -f environment.yml
   conda activate <environment_name>
   

Now your Rosalind project is set up with a virtual environment, ensuring a consistent and conflict-free development environment. You can download the relevant datasets from Rosalind and run the python scripts.