Pinned Repositories
AminoAcidMappingOnNucleotideSeq
This simple code will identify and map the amino acid, on a given peptide chain, that is been coded by a codon which contains the nucleotide at a given position on a given sequence.
ChemBLAST
BLASTing Chemical Library Similarity Search
datasink
PheWAS
The PheWAS R package
tensorflow
Open source software library for numerical computation using data flow graphs.
shameer's Repositories
shameer/ChemBLAST
BLASTing Chemical Library Similarity Search
shameer/tensorflow
Open source software library for numerical computation using data flow graphs.
shameer/AsthmaHealth
ResearchKit app studying Asthma, developed by Mt Sinai.
shameer/biojs
A library of JavaScript components to represent biological data
shameer/cbioportal
cBioPortal for Cancer Genomics
shameer/chemminetools
ChemMine Tools: an Open Source Web Framework for Small Molecule Analysis
shameer/Culturia
Intelligence augmentation software written in Guile Scheme
shameer/ddpcr
Analysis and visualization of Droplet Digital PCR data in R and on the web
shameer/Detectron
FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.
shameer/ensembl-hive
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
shameer/gemini
a lightweight db framework for disease and population genetics.
shameer/human-disease-ontology
New repository for managing the source for the human disease ontology
shameer/Ideation-Challenge
shameer/ideation.challenge_inbix2017
Inbix Ideation Challenge- Neural Network Model
shameer/ilmnQC_Module
R code for the Illumina preprocessing and QC module for ArrayAnalysis.org
shameer/Inbix_ideation
Repository for Inbix-2017 - [Ideation coding challenge]
shameer/ldpred
shameer/loftee
shameer/luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
shameer/lumi
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/lumi.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=lumi.
shameer/MLCodeLab
This a working tutorial repository to teach some Machine Learning Basics.
shameer/ncro
Non-Coding RNA Ontology
shameer/nvidia-docker
Build and run Docker containers leveraging NVIDIA GPUs
shameer/r-snippets
shameer/restoa.github.io
shameer/SciGraph
A Neo4j backed ontology store
shameer/scikit-tensor
Python library for multilinear algebra and tensor factorizations
shameer/STAR-Fusion
STAR-Fusion codebase
shameer/TimeSeriesForecasting
Material for the Time Series Forecasting article
shameer/VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)