/Genomics-Lab

Genomics & Proteomics Lab Tasks from Uni. Algorithm implementations in Java, Python or C++

Primary LanguageJava

Genomics & Proteomics Lab

this repository stores all the lab assignments for the genomics and proteomics course (4th year, 2nd semester) at university of dhaka.

Lab Assignment 1

Implementation of Needleman Wunsch algorithm to find pairwise global alignmentt of two sequences.

Lab Assignment 2

Implemention of UPGMA algorithm and construct the phylogenetic tree given the distance of 5 sequences.

Lab Assignment 3

Implemention of a solution of the partial digest problem.

Lab Assignment 4

Implement an algorithm to find a de Bruijn graph for the sequence GACTTACGTACT with k= 3 and generate the corresponding Eulerian walk.

Lab Assignment 5

Construct a suffix tree for the sequence ATCATGTCATG.