Pinned Repositories
ACL4SSR
SSR 去广告ACL规则/SS完整GFWList规则，Telegram频道订阅地址
ATAC-pipe
Analysis pipeline for ATAC-seq Data
awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
bioinfo.github.io
FindIT2
FindIT2_paper_relatedCode
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
R-loop-project
The project is from my biostatistic class at University of Texas, Austin. The goal is to use statistic analysis in R programming to evaluate published data set.
singlecell_bloodtraits
Data/analysis repository for "Interrogation of human hematopoiesis..." paper
shangguandong1996's Repositories
shangguandong1996/FindIT2
shangguandong1996/FindIT2_paper_relatedCode
shangguandong1996/singlecell_bloodtraits
Data/analysis repository for "Interrogation of human hematopoiesis..." paper
shangguandong1996/ACL4SSR
SSR 去广告ACL规则/SS完整GFWList规则，Telegram频道订阅地址
shangguandong1996/awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
shangguandong1996/bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
shangguandong1996/bioinfo.github.io
shangguandong1996/BioinfoPlotTK
shangguandong1996/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
shangguandong1996/DEQ
An R package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.
shangguandong1996/EmbryoTimecourse2018
Data and analysis scripts for our Embryo Timecourse paper.
shangguandong1996/erythroid-profiling
Analysis repository for Erythropoiesis ATAC/RNA profiling paper
shangguandong1996/ggmsa
:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2
shangguandong1996/ggSignifNew
Taking original ggsignif and adding FDR from sidderb
shangguandong1996/InteractiveComplexHeatmap
Make Interactive Complex Heatmaps
shangguandong1996/InteractiveFindIT2
shangguandong1996/mito-genotyping
Repo for scripts for Ludwig et al mtDNA genotyping
shangguandong1996/myOwn_ChIP_seq_manual
shangguandong1996/myOwnBlog_DataLink
This is the data repo of myOwnBlog
shangguandong1996/myrepo
testing my setup
shangguandong1996/myTest
shangguandong1996/picture_link
biostar or biocondtuctor picture link
shangguandong1996/R-basic
基础入门课
shangguandong1996/ReMapEnrich
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
shangguandong1996/rootaltas
source code of http://wanglab.sippe.ac.cn/rootatlas/
shangguandong1996/Script_ChIP
shangguandong1996/shangguandong1996.github.io
shangguandong1996/slingshot_test_data
a test data
shangguandong1996/testBlog
shangguandong1996/Wanglab_Guideline_for_Bioinformatics