shankara-a

Jointly advised by Dr. Gad Getz (Cancer Genome Analysis) & the Genotype Tissue Expression Experiment (GTEx)

Broad Institute of MIT & HarvardBoston

Pinned Repositories

gtex-single-nucleus-reference
Code repository for the snRNA-seq cross-tissue atlas project
Language:Jupyter Notebook20 9 16
CLUMPS-PTM
CLUMPS adapted to post-translational modifications.
Language:Python7 6 10
mudi
A collection of downstream python single-cell utilities.
Language:Python2 10 01
SignatureAnalyzer
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
Language:Python71 10 3721
SMM_clustering_2020
Repo for analysis of SMM DNA + RNA data.
Language:Jupyter Notebook31
canine
A high-performance computing solution to run jobs using SLURM
Language:Python00
mvinyard
PhD Student @ Harvard University
00
reports_posters
00
sa-base
Base setup scripts & utilities.
Language:Dockerfile21
sitefinder
CS 231n Final Project
Language:Jupyter Notebook00

shankara-a's Repositories

shankara-a/sa-base
Base setup scripts & utilities.
Language:Dockerfile21
shankara-a/canine
A high-performance computing solution to run jobs using SLURM
Language:Python00
shankara-a/mvinyard
PhD Student @ Harvard University
00
shankara-a/reports_posters
00
shankara-a/sitefinder
CS 231n Final Project
Language:Jupyter Notebook00
shankara-a/shankara-a
shankara-a/shankara-a.github.io
Language:HTML
shankara-a/SignatureAnalyzer-GPU
SignatureAnalyzer-GPU provides a Tensorflow implementation of automatic relevance determination non-negative matrix factorization (ARD NMF).
Language:Python
shankara-a/SNPs2ChIP
Language:Jupyter Notebook