/Code-for-paper-in-TMI2023

Code for 'Characterizing Survival-Associated Interactions between Tumor-infiltrating Lymphocytes and Tumors from Pathological Images and Multi-omics Data'.

Primary LanguagePython

Code for 'Characterizing Survival-Associated Interactions between Tumor-infiltrating Lymphocytes and Tumors from Pathological Images and Multi-omics Data'.

This repository contains code for 'Characterizing Survival-Associated Interactions between Tumor-infiltrating Lymphocytes and Tumors from Pathological Images and Multi-omics Data'.

Usage

Note : Use Python 3

Dataset

python BRCA_dataset.py
By run BRCA_dataset.py, you can generate 'BRCA_dataset.pickle'

Main

The training/test split for our method can be found in "BRCA_Dataset.xlsx"
python BRCA_TMI.py