shappiron

Aging_Brain_Mice

Study an aging chromatin in mouse cortex tissue

ALEC_stats

This is a temporary repository for writing python functions for ALEC platform.

BioDataHack_2019

This repository for demonstration of results taken at #BioDataHack Russian Hackaton.

CompAgingBot

Test Bot

CUR_decomposition

An implementation of "ancient" stochastic CUR matrix decomposition algorithm with example of using.

DeepDicty

Deep learning reveals new Dictyostelium chromatin properties

Lp_trigonometry

This small repo is for representation of different metric spaces trigonometry.

persistent_homology_python

Fully python + numba(jit) very basic algorithm to find homology groups and build persistence diagram from data.

Reprogramming_meta

This is a repository for code of reprogramming meta-analysis research project

TAD-Laplacian-Identification

Python algorithm for Hi-C TAD identification based on graph Laplacian method (also known as Fiedler vector method)

shappiron/Lp_trigonometry

This small repo is for representation of different metric spaces trigonometry.

shappiron/CUR_decomposition

An implementation of "ancient" stochastic CUR matrix decomposition algorithm with example of using.

shappiron/TAD-Laplacian-Identification

Python algorithm for Hi-C TAD identification based on graph Laplacian method (also known as Fiedler vector method)

shappiron/ALEC_stats

This is a temporary repository for writing python functions for ALEC platform.

shappiron/persistent_homology_python

Fully python + numba(jit) very basic algorithm to find homology groups and build persistence diagram from data.

shappiron/Reprogramming_meta

This is a repository for code of reprogramming meta-analysis research project

shappiron/Aging_Brain_Mice

Study an aging chromatin in mouse cortex tissue

shappiron/BioDataHack_2019

This repository for demonstration of results taken at #BioDataHack Russian Hackaton.

shappiron/CompAgingBot

Test Bot

shappiron/DeepDicty

Deep learning reveals new Dictyostelium chromatin properties

shappiron/DL2021_HI-C

shappiron/mergegram_python

Python implementation of mergegram algorithm from the paper.

shappiron/ProLongUI

UI for ProLong blockchain-driven data market.

shappiron/raif

shappiron/reprogramming_models

This repository contains my attempts to reproduce different cell reprogramming mathematical models based from different papers.

shappiron/single_cell_clocks

tmp

shappiron/test_kriukov

Test the hypothesis that molecules with similar structures cause similar gene expression perturbations.

shappiron/topology_loop_caller

Chromatin loop caller using TDA based on Hi-C data