sciReptor - single-cell immunoglobulin repertoire analysis toolkit (DEVELOPMENT PHASE--- UNDER CONSTRUCTION)
###Installation
Due to several external tools and various dependencies, sciReptor will take around half an hour to be setup up. A step-by-step guide for the host and the toolkit itself (including demo datasets) is available. However, in case you want to have a look at it first, there is also a completely set up virtual machine available (as VirtualBox 5.0 appliance), which contains everything including three pre-installed demo datasets.
###Related repositories
- sciReptor_library is a set positional data files and processing scripts, which download the the reference sequences and build the internal and BLAST databases used by sciReptor.
- sciReptor_analysis contains various scripts for downstream repertoire analysis.
###Citing sciReptor
If you are using sciReptor or its subcomponents in a publication please cite:
Imkeller K, Arndt PF, Wardemann H, Busse CE. sciReptor: analysis of single-cell level immunoglobulin repertoires. BMC Bioinformatics 17:67 (2016) PMID: 26847109 DOI: 10.1186/s12859-016-0920-1
###Copyright and License
Copyright (2011-2016) Katharina Imkeller, Christian Busse, Irina Czogiel and Peter Arndt.
sciReptor is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
sciReptor is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with sciReptor. If not, see http://www.gnu.org/licenses/.