A fastq file visualization tool 🦀📈🚀
sudo apt install pkg-config libfreetype6-dev libfontconfig1-dev
sudo yum install pkg-config freetype-devel fontconfig-devel
install rust first
git clone https://github.com/sharkLoc/visual_fq.git
cd visual_fq
cargo b --release$./visual_fq --help
visual_fq
title
USAGE:
visual_fq [OPTIONS] --read1 <READ1> --out <OUT> --log <LOG>
OPTIONS:
-i, --read1 <READ1> input fastq1 file
-I, --read2 <READ2> input fastq2 file [for PE reads]
-o, --out <OUT> output detail matrix file
-O, --log <LOG> output summary log file
-b, --fig-base <FIG_BASE> output base figure prefix name [default: base_plot]
-q, --fig-qual <FIG_QUAL> output quality figure prefix name [default: qual_plot]
-w, --width <WIDTH> set output figure width [default: 960]
-h, --height <HEIGHT> set output figure height [default: 540]
--help Print help information
output plot: Base_plot.png
output plot: Qual_plot.png
output file: out.matrix
Iterm Total A T G C N 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41
pos:1 100000 30.70 25.84 21.82 21.63 0.01 0 0 13 0 0 0 0 0 0 0 0 0 1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2624 0 0 0 0 95933 0 0 0 0 0 0 0 0 0
pos:2 100000 34.55 31.93 18.97 14.54 0.00 0 0 0 0 0 0 0 0 0 0 0 0 385 0 0 0 0 0 0 0 0 0 0 0 0 0 0 911 0 0 0 0 98703 0 0 0 0 1 0 0 0 0
pos:3 100000 32.02 33.43 17.12 17.44 0.00 0 0 0 0 0 0 0 0 0 0 0 0 877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1946 0 0 0 0 15710 0 0 0 0 81467 0 0 0 0
pos:4 100000 31.65 31.75 17.97 18.63 0.00 0 0 0 0 0 0 0 0 0 0 0 0 780 0 0 0 0 0 0 0 0 0 129 0 0 0 0 1596 0 0 0 0 6439 0 0 0 0 91056 0 0 0 0
pos:5 100000 33.47 30.47 18.11 17.96 0.00 0 0 0 0 0 0 0 0 0 0 0 0 17577 0 0 0 0 0 0 0 0 0 5466 0 0 0 0 6954 0 0 0 0 17572 0 0 0 0 52431 0 0 0 0
pos:6 100000 32.12 31.54 17.47 18.87 0.00 0 0 0 0 0 0 0 0 0 0 0 0 679 0 0 0 0 0 0 0 0 0 146 0 0 0 0 1277 0 0 0 0 6271 0 0 0 0 26316 0 0 0 65311
pos:7 100000 32.92 31.16 18.04 17.87 0.00 0 0 0 0 0 0 0 0 0 0 0 0 9002 0 0 0 0 0 0 0 0 0 2271 0 0 0 0 6266 0 0 0 0 12529 0 0 0 0 22133 0 0 0 47799
pos:8 100000 32.66 31.96 17.56 17.82 0.00 0 0 0 0 0 0 0 0 0 0 0 0 9214 0 0 0 0 0 0 0 0 0 1448 0 0 0 0 6513 0 0 0 0 13309 0 0 0 0 21591 0 0 0 47925
pos:9 100000 30.80 33.43 17.45 18.32 0.00 0 0 0 0 0 0 0 0 0 0 0 0 453 0 0 0 0 0 0 0 0 0 621 0 0 0 0 517 0 0 0 0 4449 0 0 0 0 17064 0 0 0 76896
pos:10 100000 31.46 32.12 18.02 18.40 0.00 0 0 0 0 0 0 0 0 0 0 0 0 491 0 0 0 0 0 0 0 0 0 575 0 0 0 0 787 0 0 0 0 2828 0 0 0 0 10635 0 0 0 84684
pos:11 100000 31.94 31.52 18.13 18.41 0.00 0 0 0 0 0 0 0 0 0 0 0 0 927 0 0 0 0 0 0 0 0 0 428 0 0 0 0 1398 0 0 0 0 3826 0 0 0 0 11294 0 0 0 82127
pos:12 100000 31.97 31.99 18.10 17.94 0.00 0 0 0 0 0 0 0 0 0 0 0 0 345 0 0 0 0 0 0 0 0 0 352 0 0 0 0 557 0 0 0 0 1985 0 0 0 0 8106 0 0 0 88655
pos:13 100000 32.51 31.52 17.98 17.99 0.00 0 0 0 0 0 0 0 0 0 0 0 0 695 0 0 0 0 0 0 0 0 0 759 0 0 0 0 1165 0 0 0 0 3008 0 0 0 0 10280 0 0 0 84093
pos:14 100000 32.29 31.67 18.02 18.02 0.00 0 0 0 0 0 0 0 0 0 0 0 0 607 0 0 0 0 0 0 0 0 0 656 0 0 0 0 1027 0 0 0 0 2771 0 0 0 0 9584 0 0 0 85355
pos:15 100000 32.52 31.59 18.25 17.64 0.00 0 0 0 0 0 0 0 0 0 0 0 0 5121 0 0 0 0 0 0 0 0 0 3160 0 0 0 0 4679 0 0 0 0 7625 0 0 0 0 17783 0 0 0 61632
pos:16 100000 32.29 31.70 18.00 18.01 0.00 0 0 0 0 0 0 0 0 0 0 0 0 432 0 0 0 0 0 0 0 0 0 496 0 0 0 0 575 0 0 0 0 3163 0 0 0 0 11843 0 0 0 83491
pos:17 100000 32.08 31.87 17.86 18.19 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1083 0 0 0 0 0 0 0 0 0 1066 0 0 0 0 1407 0 0 0 0 4047 0 0 0 0 11861 0 0 0 80536
pos:18 100000 31.94 31.49 18.22 18.35 0.00 0 0 0 0 0 0 0 0 0 0 0 0 565 0 0 0 0 0 0 0 0 0 598 0 0 0 0 926 0 0 0 0 3010 0 0 0 0 10255 0 0 0 84646
pos:19 100000 32.82 30.86 19.40 16.92 0.00 0 0 0 0 0 0 0 0 0 0 0 0 12832 0 0 0 0 0 0 0 0 0 5492 0 0 0 0 7460 0 0 0 0 10008 0 0 0 0 19335 0 0 0 44873
pos:20 100000 32.66 31.23 18.47 17.64 0.00 0 0 0 0 0 0 0 0 0 0 0 0 9836 0 0 0 0 0 0 0 0 0 5133 0 0 0 0 4498 0 0 0 0 12902 0 0 0 0 21850 0 0 0 45781
pos:21 100000 32.09 31.68 18.13 18.10 0.00 0 0 0 0 0 0 0 0 0 0 0 0 894 0 0 0 0 0 0 0 0 0 1260 0 0 0 0 3062 0 0 0 0 3379 0 0 0 0 19436 0 0 0 71969
pos:22 100000 32.45 30.92 18.38 18.25 0.00 0 0 0 0 0 0 0 0 0 0 0 0 5324 0 0 0 0 0 0 0 0 0 3456 0 0 0 0 5914 0 0 0 0 6264 0 0 0 0 18111 0 0 0 60931
pos:23 100000 32.01 31.90 18.12 17.96 0.00 0 0 0 0 0 0 0 0 0 0 0 0 958 0 0 0 0 0 0 0 0 0 1233 0 0 0 0 2806 0 0 0 0 3264 0 0 0 0 15490 0 0 0 76249
pos:24 100000 31.86 31.93 18.00 18.22 0.00 0 0 0 0 0 0 0 0 0 0 0 0 3334 0 0 0 0 0 0 0 0 0 2580 0 0 0 0 4910 0 0 0 0 5495 0 0 0 0 17609 0 0 0 66072
pos:25 100000 32.16 31.51 18.16 18.17 0.00 0 0 0 0 0 0 0 0 0 0 0 0 3386 0 0 0 0 0 0 0 0 0 2702 0 0 0 0 4698 0 0 0 0 5190 0 0 0 0 17410 0 0 0 66614
pos:26 100000 31.75 31.51 18.68 18.05 0.00 0 0 0 0 0 0 0 0 0 0 0 0 10560 0 0 0 0 0 0 0 0 0 3764 0 0 0 0 6248 0 0 0 0 6106 0 0 0 0 17460 0 0 0 55862
pos:27 100000 31.84 31.70 18.14 18.32 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1605 0 0 0 0 0 0 0 0 0 1599 0 0 0 0 3798 0 0 0 0 3168 0 0 0 0 16208 0 0 0 73622
pos:28 100000 31.90 31.67 18.25 18.18 0.00 0 0 0 0 0 0 0 0 0 0 0 0 2800 0 0 0 0 0 0 0 0 0 1657 0 0 0 0 3165 0 0 0 0 3459 0 0 0 0 14050 0 0 0 74869
pos:29 100000 32.14 31.45 19.21 17.20 0.00 0 0 0 0 0 0 0 0 0 0 0 0 20265 0 0 0 0 0 0 0 0 0 5506 0 0 0 0 8284 0 0 0 0 7202 0 0 0 0 17728 0 0 0 41015
pos:30 100000 31.68 31.89 18.26 18.16 0.00 0 0 0 0 0 0 0 0 0 0 0 0 5889 0 0 0 0 0 0 0 0 0 3956 0 0 0 0 7350 0 0 0 0 5600 0 0 0 0 21968 0 0 0 55237
pos:31 100000 31.89 31.18 18.40 18.53 0.00 0 0 0 0 0 0 0 0 0 0 0 0 2366 0 0 0 0 0 0 0 0 0 2110 0 0 0 0 4397 0 0 0 0 3951 0 0 0 0 17784 0 0 0 69392
pos:32 100000 31.91 31.16 18.56 18.37 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1168 0 0 0 0 0 0 0 0 0 1037 0 0 0 0 2259 0 0 0 0 2713 0 0 0 0 13156 0 0 0 79667
pos:33 100000 31.66 31.72 18.74 17.88 0.00 0 0 0 0 0 0 0 0 0 0 0 0 11484 0 0 0 0 0 0 0 0 0 3726 0 0 0 0 6220 0 0 0 0 6213 0 0 0 0 17312 0 0 0 55045
pos:34 100000 31.56 31.63 18.59 18.22 0.00 0 0 0 0 0 0 0 0 0 0 0 0 2616 0 0 0 0 0 0 0 0 0 1987 0 0 0 0 4279 0 0 0 0 3711 0 0 0 0 16955 0 0 0 70452
pos:35 100000 31.97 31.56 18.03 18.43 0.00 0 0 0 0 0 0 0 0 0 0 0 0 673 0 0 0 0 0 0 0 0 0 710 0 0 0 0 1756 0 0 0 0 2038 0 0 0 0 11353 0 0 0 83470
pos:36 100000 31.91 31.47 18.24 18.38 0.00 0 0 0 0 0 0 0 0 0 0 0 0 3716 0 0 0 0 0 0 0 0 0 1808 0 0 0 0 3278 0 0 0 0 3826 0 0 0 0 13683 0 0 0 73689
pos:37 100000 31.88 30.89 18.61 18.62 0.00 0 0 0 0 0 0 0 0 0 0 0 0 8004 0 0 0 0 0 0 0 0 0 3065 0 0 0 0 5066 0 0 0 0 5129 0 0 0 0 15565 0 0 0 63171
pos:38 100000 31.91 31.64 19.00 17.44 0.00 0 0 0 0 0 0 0 0 0 0 0 0 21872 0 0 0 0 0 0 0 0 0 6000 0 0 0 0 8879 0 0 0 0 7359 0 0 0 0 18147 0 0 0 37743
pos:39 100000 31.72 31.66 18.15 18.46 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1248 0 0 0 0 0 0 0 0 0 1801 0 0 0 0 4775 0 0 0 0 3383 0 0 0 0 22136 0 0 0 66657
pos:40 100000 31.70 31.79 18.30 18.22 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1419 0 0 0 0 0 0 0 0 0 1094 0 0 0 0 2404 0 0 0 0 3151 0 0 0 0 14291 0 0 0 77641
pos:41 100000 31.49 31.76 18.32 18.44 0.00 0 0 0 0 0 0 0 0 0 0 0 0 2349 0 0 0 0 0 0 0 0 0 1383 0 0 0 0 2569 0 0 0 0 3247 0 0 0 0 12768 0 0 0 77684
pos:42 100000 31.35 31.67 18.50 18.48 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1344 0 0 0 0 0 0 0 0 0 1028 0 0 0 0 2088 0 0 0 0 2496 0 0 0 0 10924 0 0 0 82120
pos:43 100000 31.50 31.67 18.60 18.22 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1074 0 0 0 0 0 0 0 0 0 809 0 0 0 0 1655 0 0 0 0 2121 0 0 0 0 9821 0 0 0 84520
pos:44 100000 31.85 31.29 18.61 18.24 0.00 0 0 0 0 0 0 0 0 0 0 0 0 6144 0 0 0 0 0 0 0 0 0 2465 0 0 0 0 4173 0 0 0 0 4760 0 0 0 0 14513 0 0 0 67945
pos:45 100000 31.64 31.68 18.34 18.34 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1287 0 0 0 0 0 0 0 0 0 1172 0 0 0 0 2378 0 0 0 0 2584 0 0 0 0 12642 0 0 0 79937
pos:46 100000 31.92 31.39 18.27 18.41 0.00 0 0 0 0 0 0 0 0 0 0 0 0 3820 0 0 0 0 0 0 0 0 0 2068 0 0 0 0 3682 0 0 0 0 4213 0 0 0 0 14494 0 0 0 71723
pos:47 100000 31.66 31.72 18.40 18.21 0.00 0 0 0 0 0 0 0 0 0 0 0 0 2190 0 0 0 0 0 0 0 0 0 1458 0 0 0 0 2864 0 0 0 0 3168 0 0 0 0 13478 0 0 0 76842
pos:48 100000 31.60 31.52 18.37 18.51 0.00 0 0 0 0 0 0 0 0 0 0 0 0 2498 0 0 0 0 0 0 0 0 0 1572 0 0 0 0 3014 0 0 0 0 3467 0 0 0 0 13210 0 0 0 76239
pos:49 100000 31.57 31.66 18.25 18.53 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1915 0 0 0 0 0 0 0 0 0 1267 0 0 0 0 2447 0 0 0 0 2757 0 0 0 0 11881 0 0 0 79733
pos:50 100000 33.39 31.71 18.68 16.21 0.00 0 0 0 0 0 0 0 0 0 0 0 0 27146 0 0 0 0 0 0 0 0 0 6870 0 0 0 0 9544 0 0 0 0 7727 0 0 0 0 17074 0 0 0 31639
pos:51 100000 31.69 30.80 19.16 18.35 0.00 0 0 0 0 0 0 0 0 0 0 0 0 13613 0 0 0 0 0 0 0 0 0 5901 0 0 0 0 9789 0 0 0 0 7159 0 0 0 0 22990 0 0 0 40548
pos:52 100000 31.81 31.05 18.64 18.50 0.00 0 0 0 0 0 0 0 0 0 0 0 0 10511 0 0 0 0 0 0 0 0 0 5285 0 0 0 0 9518 0 0 0 0 6896 0 0 0 0 22259 0 0 0 45531
pos:53 100000 31.98 31.48 18.20 18.35 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1714 0 0 0 0 0 0 0 0 0 1768 0 0 0 0 4414 0 0 0 0 4070 0 0 0 0 19177 0 0 0 68857
pos:54 100000 31.79 31.77 18.26 18.17 0.00 0 0 0 0 0 0 0 0 0 0 0 0 2742 0 0 0 0 0 0 0 0 0 1691 0 0 0 0 3308 0 0 0 0 4530 0 0 0 0 14971 0 0 0 72758
pos:55 100000 31.75 31.57 18.73 17.94 0.00 0 0 0 0 0 0 0 0 0 0 0 0 16997 0 0 0 0 0 0 0 0 0 4936 0 0 0 0 7804 0 0 0 0 7903 0 0 0 0 18106 0 0 0 44254
pos:56 100000 31.68 31.42 18.41 18.49 0.00 0 0 0 0 0 0 0 0 0 0 0 0 1555 0 0 0 0 0 0 0 0 0 1660 0 0 0 0 3859 0 0 0 0 4099 0 0 0 0 18966 0 0 0 69861
pos:57 100000 31.95 31.43 18.31 18.31 0.00 0 0 0 0 0 0 0 0 0 0 0 0 3980 0 0 0 0 0 0 0 0 0 2100 0 0 0 0 3953 0 0 0 0 5209 0 0 0 0 15842 0 0 0 68916
pos:58 100000 31.79 31.20 18.49 18.52 0.00 0 0 0 0 0 0 0 0 0 0 0 0 6545 0 0 0 0 0 0 0 0 0 2843 0 0 0 0 4981 0 0 0 0 5734 0 0 0 0 15826 0 0 0 64071
pos:59 100000 31.83 31.34 18.54 18.29 0.00 0 0 0 0 0 0 0 0 0 0 0 0 3089 0 0 0 0 0 0 0 0 0 2112 0 0 0 0 3925 0 0 0 0 4301 0 0 0 0 14809 0 0 0 71764
pos:60 100000 31.88 31.33 18.47 18.32 0.00 0 0 0 0 0 0 0 0 0 0 0 0 11941 0 0 0 0 0 0 0 0 0 4075 0 0 0 0 6582 0 0 0 0 6769 0 0 0 0 17330 0 0 0 53303
pos:61 100000 31.79 31.28 18.60 18.32 0.00 0 0 0 0 0 0 0 0 0 0 0 0 15541 0 0 0 0 0 0 0 0 0 5576 0 0 0 0 8508 0 0 0 0 8045 0 0 0 0 18901 0 0 0 43429
pos:62 100000 31.89 31.40 18.78 17.93 0.00 0 0 0 0 0 0 0 0 0 0 0 0 21292 0 0 0 0 0 0 0 0 0 6550 0 0 0 0 9736 0 0 0 0 8172 0 0 0 0 18198 0 0 0 36052
pos:63 100000 31.51 31.37 19.21 17.91 0.00 0 0 0 0 0 0 0 0 0 0 0 0 21733 0 0 0 0 0 0 0 0 0 7080 0 0 0 0 10933 0 0 0 0 8047 0 0 0 0 18576 0 0 0 33631
pos:64 100000 31.81 31.52 18.49 18.18 0.00 0 0 0 0 0 0 0 0 0 0 0 0 12778 0 0 0 0 0 0 0 0 0 6600 0 0 0 0 11152 0 0 0 0 7948 0 0 0 0 20927 0 0 0 40595
pos:65 100000 31.93 31.23 18.41 18.43 0.00 0 0 0 0 0 0 0 0 0 0 0 0 7266 0 0 0 0 0 0 0 0 0 4596 0 0 0 0 8283 0 0 0 0 10733 0 0 0 0 17673 0 0 0 51449
pos:66 100000 31.57 31.28 18.55 18.60 0.00 0 0 0 0 0 0 0 0 0 0 0 0 6755 0 0 0 0 0 0 0 0 0 3726 0 0 0 0 6599 0 0 0 0 6632 0 0 0 0 18735 0 0 0 57553
pos:67 100000 31.57 31.45 18.57 18.40 0.00 0 0 0 0 0 0 0 0 0 0 0 0 3328 0 0 0 0 0 0 0 0 0 2348 0 0 0 0 4546 0 0 0 0 4785 0 0 0 0 16716 0 0 0 68277
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pos:114 100000 31.71 31.48 18.42 18.39 0.00 0 0 0 0 0 0 0 0 0 0 0 0 10451 0 0 0 0 0 0 0 0 0 15084 0 0 0 0 3738 0 0 0 0 13527 0 0 0 0 20446 0 0 0 36754
pos:115 100000 31.72 31.24 18.47 18.57 0.00 0 0 0 0 0 0 0 0 0 0 0 0 3186 0 0 0 0 0 0 0 0 0 6807 0 0 0 0 2374 0 0 0 0 10979 0 0 0 0 24678 0 0 0 51976
pos:116 100000 31.52 31.57 18.93 17.98 0.00 0 0 0 0 0 0 0 0 0 0 0 0 24462 0 0 0 0 0 0 0 0 0 9217 0 0 0 0 7246 0 0 0 0 11288 0 0 0 0 18801 0 0 0 28986
pos:117 100000 31.30 31.43 19.30 17.96 0.00 0 0 0 0 0 0 0 0 0 0 0 0 28409 0 0 0 0 0 0 0 0 0 13515 0 0 0 0 5815 0 0 0 0 11963 0 0 0 0 16773 0 0 0 23525
pos:118 100000 31.46 30.86 18.64 19.03 0.00 0 0 0 0 0 0 0 0 0 0 0 0 18936 0 0 0 0 0 0 0 0 0 16310 0 0 0 0 4522 0 0 0 0 12883 0 0 0 0 18662 0 0 0 28687
pos:119 100000 31.40 31.09 18.91 18.60 0.00 0 0 0 0 0 0 0 0 0 0 0 0 16539 0 0 0 0 0 0 0 0 0 15047 0 0 0 0 4674 0 0 0 0 12694 0 0 0 0 19605 0 0 0 31441
pos:120 100000 31.62 31.08 18.63 18.67 0.00 0 0 0 0 0 0 0 0 0 0 0 0 15017 0 0 0 0 0 0 0 0 0 13437 0 0 0 0 4644 0 0 0 0 12275 0 0 0 0 19805 0 0 0 34822
pos:121 100000 31.68 31.05 18.54 18.73 0.00 0 0 0 0 0 0 0 0 0 0 0 0 11180 0 0 0 0 0 0 0 0 0 11886 0 0 0 0 5929 0 0 0 0 9964 0 0 0 0 21844 0 0 0 39197
pos:122 100000 31.81 31.00 18.56 18.63 0.00 0 0 0 0 0 0 0 0 0 0 0 0 10737 0 0 0 0 0 0 0 0 0 9933 0 0 0 0 6047 0 0 0 0 9663 0 0 0 0 21990 0 0 0 41630
pos:123 100000 31.90 31.17 18.53 18.40 0.00 0 0 0 0 0 0 0 0 0 0 0 0 13478 0 0 0 0 0 0 0 0 0 9670 0 0 0 0 6990 0 0 0 0 9658 0 0 0 0 21558 0 0 0 38646
pos:124 100000 31.62 31.22 18.58 18.58 0.00 0 0 0 0 0 0 0 0 0 0 0 0 6838 0 0 0 0 0 0 0 0 0 8732 0 0 0 0 5042 0 0 0 0 9548 0 0 0 0 23134 0 0 0 46706
pos:125 100000 31.81 31.06 18.61 18.51 0.00 0 0 0 0 0 0 0 0 0 0 0 0 8964 0 0 0 0 0 0 0 0 0 5352 0 0 0 0 5016 0 0 0 0 8659 0 0 0 0 23651 0 0 0 48358
pos:126 100000 31.59 31.39 18.56 18.46 0.00 0 0 0 0 0 0 0 0 0 0 0 0 12997 0 0 0 0 0 0 0 0 0 5858 0 0 0 0 6012 0 0 0 0 9006 0 0 0 0 22921 0 0 0 43206
pos:127 100000 31.53 31.53 18.55 18.39 0.00 0 0 0 0 0 0 0 0 0 0 0 0 15367 0 0 0 0 0 0 0 0 0 6639 0 0 0 0 5906 0 0 0 0 9110 0 0 0 0 21858 0 0 0 41120
pos:128 100000 31.77 31.13 18.63 18.46 0.00 0 0 0 0 0 0 0 0 0 0 0 0 16501 0 0 0 0 0 0 0 0 0 7601 0 0 0 0 6424 0 0 0 0 9856 0 0 0 0 22415 0 0 0 37203
pos:129 100000 31.47 31.11 18.59 18.83 0.00 0 0 0 0 0 0 0 0 0 0 0 0 13863 0 0 0 0 0 0 0 0 0 7507 0 0 0 0 5965 0 0 0 0 9728 0 0 0 0 22879 0 0 0 40058
pos:130 100000 31.59 31.15 18.40 18.86 0.00 0 0 0 0 0 0 0 0 2594 0 0 0 15205 0 0 0 0 0 0 0 0 0 8217 0 0 0 0 5987 0 0 0 0 13758 0 0 0 0 19098 0 0 0 35141
pos:131 100000 31.42 31.75 18.91 17.92 0.00 0 0 0 0 0 0 0 0 0 0 0 0 28683 0 0 0 0 0 0 0 0 0 8470 0 0 0 0 7534 0 0 0 0 9562 0 0 0 0 19782 0 0 0 25969
pos:132 100000 31.55 31.26 18.72 18.46 0.00 0 0 0 0 0 0 0 0 0 0 0 0 12330 0 0 0 0 0 0 0 0 0 11125 0 0 0 0 5616 0 0 0 0 11489 0 0 0 0 23930 0 0 0 35510
pos:133 100000 31.51 31.14 18.63 18.71 0.00 0 0 0 0 0 0 0 0 984 0 0 0 5282 0 0 0 0 0 0 0 0 0 6490 0 0 0 0 4219 0 0 0 0 12863 0 0 0 0 25076 0 0 0 45086
pos:134 100000 31.72 31.21 18.49 18.57 0.00 0 0 0 0 0 0 0 0 1560 0 0 0 8631 0 0 0 0 0 0 0 0 0 5648 0 0 0 0 5042 0 0 0 0 13018 0 0 0 0 21217 0 0 0 44884
pos:135 100000 31.50 31.43 18.65 18.41 0.00 0 0 0 0 0 0 0 0 1944 0 0 0 11485 0 0 0 0 0 0 0 0 0 6832 0 0 0 0 5579 0 0 0 0 14173 0 0 0 0 20350 0 0 0 39637
pos:136 100000 31.68 31.69 18.91 17.72 0.00 0 0 0 0 0 0 0 0 0 0 0 0 30597 0 0 0 0 0 0 0 0 0 8141 0 0 0 0 8311 0 0 0 0 9940 0 0 0 0 20183 0 0 0 22828
pos:137 100000 31.75 31.44 18.37 18.44 0.00 0 0 0 0 0 0 0 0 2089 0 0 0 13305 0 0 0 0 0 0 0 0 0 11230 0 0 0 0 6034 0 0 0 0 14886 0 0 0 0 22160 0 0 0 30296
pos:138 100000 31.84 31.38 18.44 18.33 0.00 0 0 0 0 0 0 0 0 1712 0 0 0 10273 0 0 0 0 0 0 0 0 0 8803 0 0 0 0 5606 0 0 0 0 14069 0 0 0 0 22862 0 0 0 36675
pos:139 100000 31.20 31.50 18.62 18.67 0.00 0 0 0 0 0 0 0 0 1208 0 0 0 7651 0 0 0 0 0 0 0 0 0 6629 0 0 0 0 4776 0 0 0 0 13027 0 0 0 0 22664 0 0 0 44045
pos:140 100000 31.60 31.23 18.48 18.70 0.00 0 0 0 0 0 0 0 0 1422 0 0 0 8094 0 0 0 0 0 0 0 0 0 5684 0 0 0 0 4847 0 0 0 0 13174 0 0 0 0 21664 0 0 0 45115
pos:141 100000 31.41 31.51 18.64 18.45 0.00 0 0 0 0 0 0 0 0 1477 0 0 0 8818 0 0 0 0 0 0 0 0 0 6014 0 0 0 0 4974 0 0 0 0 13359 0 0 0 0 21123 0 0 0 44235
pos:142 100000 31.49 31.56 18.75 18.21 0.00 0 0 0 0 0 0 0 0 2952 0 0 0 16987 0 0 0 0 0 0 0 0 0 8302 0 0 0 0 6594 0 0 0 0 14891 0 0 0 0 18696 0 0 0 31578
pos:143 100000 31.46 31.23 18.62 18.68 0.00 0 0 0 0 0 0 0 0 1763 0 0 0 10482 0 0 0 0 0 0 0 0 0 8216 0 0 0 0 5364 0 0 0 0 14222 0 0 0 0 22659 0 0 0 37294
pos:144 100000 31.05 31.43 18.86 18.65 0.00 0 0 0 0 0 0 0 0 4104 0 0 0 23695 0 0 0 0 0 0 0 0 0 9489 0 0 0 0 6837 0 0 0 0 14349 0 0 0 0 17157 0 0 0 24369
pos:145 100000 31.44 31.23 18.44 18.89 0.00 0 0 0 0 0 0 0 0 1677 0 0 0 11376 0 0 0 0 0 0 0 0 0 10428 0 0 0 0 10101 0 0 0 0 16561 0 0 0 0 16239 0 0 0 33618
pos:146 100000 31.41 31.08 19.04 18.47 0.00 0 0 0 0 0 0 0 0 3123 0 0 0 19448 0 0 0 0 0 0 0 0 0 9116 0 0 0 0 9602 0 0 0 0 14651 0 0 0 0 14824 0 0 0 29236
pos:147 100000 31.11 31.37 19.04 18.48 0.00 0 0 0 0 0 0 0 0 4744 0 0 0 27333 0 0 0 0 0 0 0 0 0 10959 0 0 0 0 7053 0 0 0 0 14308 0 0 0 0 16027 0 0 0 19576
pos:148 100000 31.38 31.05 19.17 18.40 0.00 0 0 0 0 0 0 0 0 4487 0 0 0 26753 0 0 0 0 0 0 0 0 0 13559 0 0 0 0 6937 0 0 0 0 14102 0 0 0 0 16424 0 0 0 17738
pos:149 100000 31.30 31.05 18.83 18.82 0.00 0 0 0 0 0 0 0 0 2313 0 0 0 16224 0 0 0 0 0 0 0 0 0 13607 0 0 0 0 10976 0 0 0 0 16760 0 0 0 0 14934 0 0 0 25186
pos:150 100000 31.38 31.04 18.79 18.79 0.00 0 0 0 0 0 0 0 0 2439 0 0 0 15943 0 0 0 0 0 0 0 0 0 10277 0 0 0 0 10001 0 0 0 0 16133 0 0 0 0 15672 0 0 0 29535
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add base distrbution plot
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add output matrix file
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add base quality plot
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add command line args
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rename output png file
** any bugs please report issues **💖