Pinned Repositories
10X-scRNAseq
Shell and R scripts used to process single-cell RNAseq files using the 10X library construction kit
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
ahcg_pipeline
Variant calling pipeline for genomic data analysis
airr_container
Docker image containing tools commonly used for AIRR-Seq analysis
airr_seq_pipelines
AIRR-Seq analysis workflows
Assembler
Pipeline to assemble genomes using multiple approaches
dv-pipelines
Pipelines for Analysis And Visualization
LymphoSeq2
R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by major Immuno sequencing platforms
NeST
scrna_seq_pipelines
Nextflow pipelines for scRNA-Seq GEX and VDJ analysis in R
shashidhar22's Repositories
shashidhar22/LymphoSeq2
R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by major Immuno sequencing platforms
shashidhar22/airr_seq_pipelines
AIRR-Seq analysis workflows
shashidhar22/dv-pipelines
Pipelines for Analysis And Visualization
shashidhar22/NeST
shashidhar22/10X-scRNAseq
Shell and R scripts used to process single-cell RNAseq files using the 10X library construction kit
shashidhar22/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
shashidhar22/airr_container
Docker image containing tools commonly used for AIRR-Seq analysis
shashidhar22/MaRSWebsite
shashidhar22/scrna_seq_pipelines
Nextflow pipelines for scRNA-Seq GEX and VDJ analysis in R
shashidhar22/BioRxiv-Template
MS Word templates for a more readable BioRxiv product
shashidhar22/breakaway
Species richness with high diversity
shashidhar22/DeepRC
DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning
shashidhar22/DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
shashidhar22/docker-sc-tools
A docker image for all single cell analysis tools used by the Warren Lab
shashidhar22/gentoo
Count and memory optimized finch
shashidhar22/ks_manuscript
KS manuscript nextflow scripts, environments and notebooks
shashidhar22/ks_til_analysis
shashidhar22/LymphoSeq
This R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay
shashidhar22/malid
shashidhar22/minimal-mistakes
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
shashidhar22/nextflow_workflows
Repository for nextflow scripts and workflows
shashidhar22/scRepertoire
A toolkit for single-cell immune profiling
shashidhar22/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
shashidhar22/shashidhar22.github.io
Current webpage
shashidhar22/shashidhar22.github.io-old
Personal webpage
shashidhar22/SparK
Plot NGS tracks
shashidhar22/TULIP-TCR
shashidhar22/turnkey-service-php
Docker Turnkey for PHP/MongoDB service
shashidhar22/viral_genomics
Workflows from the EBV ENKTL project
shashidhar22/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples