Pinned Repositories
ADIOS-Cancer-Data
BATCH-FLEX-ShinyApp
BATCHFLEX
BERLIN
BERLIN: Basic Exploration of single-cell RNAseq data and LINeages.
CSEminer-manuscript
DRPPM-EASY-CCLE
This is an extension of the DRPPM-EASY app integrating Cancer Cell Line Encyclopedia (CCLE) data for seamless differential gene expression and GSEA based on user sample selection
DRPPM-EASY-ExprAnalysisShinY
With a few steps this workflow will allow for easy preparation of an R Shiny webpage for differential gene expression and gene set enrichment analysis
DRPPM-EASY-Integration
This is an extension of the DRPPM-EASY app, allowing for further integration of data and matrices comparison with differential gene expression and GSEA
DRPPM-EASY-LargeProject
As an extension of the DRPPM EASY app, this "Large Project" version allows users to analyze data from large studies and consortiums such as CCLE and CPTAC and perform custom differential gene expression and pathway analysis
PATH-SURVEYOR-Suite
Survival Analysis through the integration of expression data, phenotype data, and clinical data
shawlab-moffitt's Repositories
shawlab-moffitt/BATCHFLEX
shawlab-moffitt/BATCH-FLEX-ShinyApp
shawlab-moffitt/BERLIN
BERLIN: Basic Exploration of single-cell RNAseq data and LINeages.
shawlab-moffitt/CSEminer-manuscript
shawlab-moffitt/PATH-SURVEYOR-Suite
Survival Analysis through the integration of expression data, phenotype data, and clinical data
shawlab-moffitt/DRPPM-EASY-ExprAnalysisShinY
With a few steps this workflow will allow for easy preparation of an R Shiny webpage for differential gene expression and gene set enrichment analysis
shawlab-moffitt/BigWigVisualization
shawlab-moffitt/CSEminer-manuscript-generate-docker-images
shawlab-moffitt/CSIdb
shawlab-moffitt/DemoData
shawlab-moffitt/DRPPM-UMAP-Shiny
shawlab-moffitt/GEO_DataDownload_Example
shawlab-moffitt/Human2MouseGeneSymbolConversion
shawlab-moffitt/intern-data
shawlab-moffitt/LegacyBERLIN
shawlab-moffitt/mergeQC
shawlab-moffitt/PernaLab_Surface_Protein_Annotation_Pipeline-
shawlab-moffitt/ProteinPaintHeatmapExample
shawlab-moffitt/sc-type
shawlab-moffitt/sc_census_api
shawlab-moffitt/scGate_models
Cell type gating models for scGate
shawlab-moffitt/Shiny_app_gene_info
shawlab-moffitt/shinyEvents
shawlab-moffitt/ShinyLogistics
shawlab-moffitt/ShinyPrediction
shawlab-moffitt/ShinyssGSEA
shawlab-moffitt/Splice-Junction-Filter-Workflow
shawlab-moffitt/SpliceJunctionForGenomePaint
shawlab-moffitt/ssGSEA-Matrix
shawlab-moffitt/Thac_scRNA-seq_Annotation_Thac