This repository contains data preprocessing, analysis, and visualzation details on this paper :
Reliable analysis of clinical tumor-only whole exome sequencing data (link)
Oh et al., JCO Clin Cancer Inform. 2020 Apr;4:321-335. doi: 10.1200/CCI.19.00130.
The analysis workflow is implemented in Terra workspace :
https://app.terra.bio/#workspaces/waldronlab-terra/Tumor_Only_CNV